Gene detail

Detailed information of OS493_009350-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2064710...2067533
NR annotation: KAJ7374021.1, Flotillin-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6QLR4	Flotillin-2 OS=Bos taurus OX=9913 GN=FLOT2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011210 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan
IPR027705 all species →	Family	Flotillin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806 all species →	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016600 all species →	Cellular Component	flotillin complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045661 all species →	Biological Process	regulation of myoblast differentiation	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009350-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009350-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

92TPM > 0

7Conditions

56.6Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	10	1.16	3.61
polyp at pH7 6	18	12	1.91	5.20
coral polyp · control treatment	16	16	9.17	46.30
coral polyp · oil and dispersant treatment	16	15	11.85	33.21
coral polyp · oil treatment	16	16	13.39	56.64
coral polyp · dispersant treatment	16	15	3.79	10.84
Polyp	10	8	1.48	5.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.67
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.42
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.82
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.