Gene detail

Detailed information of OS493_009374-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2291570...2301742
NR annotation: KAJ7374044.1, M-phase phosphoprotein 9 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008921 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_009374-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR001126 all species →	Domain	UmuC domain	Interproscan
IPR026636 all species →	Family	M-phase phosphoprotein 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14926 all species →	M-PHASE PHOSPHOPROTEIN 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009374-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009374-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

26.0Max TPM

6.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.05	10.04
polyp at pH7 6	18	18	8.66	16.89
coral polyp · control treatment	16	16	6.91	20.37
coral polyp · oil and dispersant treatment	16	16	5.40	25.97
coral polyp · oil treatment	16	16	6.32	9.73
coral polyp · dispersant treatment	16	16	4.38	9.41
Polyp	10	10	7.74	11.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.27
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.20
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.34
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.