Gene detail

Detailed information of OS493_009377-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2308826...2312003
NR annotation: KAJ7374047.1, Cyclin-dependent kinase 2-associated protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49119	Cyclin-dependent kinase 2-associated protein 1 OS=Mesocricetus auratus OX=10036 GN=CDK2AP1 PE=2 SV=1
O35207	Cyclin-dependent kinase 2-associated protein 1 OS=Mus musculus OX=10090 GN=Cdk2ap1 PE=1 SV=2
O14519	Cyclin-dependent kinase 2-associated protein 1 OS=Homo sapiens OX=9606 GN=CDK2AP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007217 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09806 all species →	CDK2AP	Cyclin-dependent kinase 2-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017266 all species →	Family	Cyclin-dependent kinase 2-associated protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22607 all species →	DELETED IN ORAL CANCER 1/CDK2-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009377-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009377-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

11.8Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.81	6.83
polyp at pH7 6	18	18	5.03	7.36
coral polyp · control treatment	16	16	5.84	9.26
coral polyp · oil and dispersant treatment	16	16	5.37	11.76
coral polyp · oil treatment	16	16	5.48	7.32
coral polyp · dispersant treatment	16	16	3.89	5.98
Polyp	10	9	4.21	7.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.