Gene detail

Detailed information of OS493_009383-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2364736...2365380
NR annotation: KAJ7374053.1, hypothetical protein OS493_009383 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8HYJ1	Translocase of chloroplast 34 homolog, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=TOC34 PE=1 SV=1
A9SV59	Translocase of chloroplast 101, chloroplastic OS=Physcomitrium patens OX=3218 GN=TOC101 PE=3 SV=1
A9SY65	Translocase of chloroplast 108, chloroplastic OS=Physcomitrium patens OX=3218 GN=TOC108 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002055 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04548 all species →	AIG1	AIG1 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006703 all species →	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR045058 all species →	Family	GTPase GIMA/IAN/Toc	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903 all species →	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009383-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009383-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

9.1Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.38	6.89
polyp at pH7 6	18	18	2.63	5.59
coral polyp · control treatment	16	16	4.22	9.14
coral polyp · oil and dispersant treatment	16	15	2.54	6.79
coral polyp · oil treatment	16	16	3.10	5.29
coral polyp · dispersant treatment	16	15	1.51	4.47
Polyp	10	8	1.03	2.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.79
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.39
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.