Gene detail

Detailed information of OS493_009414-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2679712...2682448
NR annotation: KAJ7374083.1, TBCC domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IF93	TBCC domain-containing protein 1 OS=Bos taurus OX=9913 GN=TBCCD1 PE=2 SV=1
Q9NVR7	TBCC domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TBCCD1 PE=1 SV=1
A4QP31	TBCC domain-containing protein 1 OS=Danio rerio OX=7955 GN=tbccd1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007104 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_009414-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039589 all species →	Family	TBCC domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16052 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031616 all species →	Cellular Component	spindle pole centrosome	Interproscan
GO:0051661 all species →	Biological Process	maintenance of centrosome location	Interproscan
GO:0051684 all species →	Biological Process	maintenance of Golgi location	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009414-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009414-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

32.5Max TPM

13.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.20	25.31
polyp at pH7 6	18	17	16.07	24.46
coral polyp · control treatment	16	16	15.14	25.02
coral polyp · oil and dispersant treatment	16	16	10.55	32.47
coral polyp · oil treatment	16	16	13.31	21.05
coral polyp · dispersant treatment	16	16	5.80	12.78
Polyp	10	10	11.14	16.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.56
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.05
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.46
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.48
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.73
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.