Gene detail

Detailed information of OS493_009415-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2682560...2689387
NR annotation: KAJ7374084.1, TBCC domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NVR7	TBCC domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TBCCD1 PE=1 SV=1
A4IF93	TBCC domain-containing protein 1 OS=Bos taurus OX=9913 GN=TBCCD1 PE=2 SV=1
Q5FVR8	TBCC domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Tbccd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007104 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07986 all species →	TBCC	Tubulin binding cofactor C	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR012945 all species →	Domain	Tubulin binding cofactor C-like domain	Interproscan
IPR039589 all species →	Family	TBCC domain-containing protein 1	Interproscan
IPR017901 all species →	Domain	C-CAP/cofactor C-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16052 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031616 all species →	Cellular Component	spindle pole centrosome	Interproscan
GO:0051661 all species →	Biological Process	maintenance of centrosome location	Interproscan
GO:0051684 all species →	Biological Process	maintenance of Golgi location	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009415-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009415-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

30.6Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.22	10.28
polyp at pH7 6	18	18	8.00	11.46
coral polyp · control treatment	16	16	9.02	17.62
coral polyp · oil and dispersant treatment	16	16	7.56	30.56
coral polyp · oil treatment	16	16	7.06	11.44
coral polyp · dispersant treatment	16	16	4.26	9.44
Polyp	10	9	4.20	6.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.