Gene detail

Detailed information of OS493_009430-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2767485...2771792
NR annotation: KAJ7374098.1, Ankyrin repeat and FYVE domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q810B6	Rabankyrin-5 OS=Mus musculus OX=10090 GN=Ankfy1 PE=1 SV=2
Q9P2R3	Rabankyrin-5 OS=Homo sapiens OX=9606 GN=ANKFY1 PE=1 SV=2
Q9LUM0	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004266 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR017073 all species →	Family	Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR049764 all species →	Domain	Rabankyrin-5, FYVE domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46275 all species →	HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0031623 all species →	Biological Process	receptor internalization	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009430-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009430-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

40.7Max TPM

23.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	23.02	27.64
polyp at pH7 6	18	18	24.25	31.87
coral polyp · control treatment	16	16	29.44	40.74
coral polyp · oil and dispersant treatment	16	16	21.91	30.84
coral polyp · oil treatment	16	16	27.08	39.00
coral polyp · dispersant treatment	16	16	19.06	30.75
Polyp	10	9	11.39	17.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.45
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.25
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.