Gene detail

Detailed information of OS493_009468-T1 in Lophelia pertusa

Genomic Location: scaffold_22:3186884...3193498
NR annotation: KAJ7374131.1, GTPase activator [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3UYX5	Regulator of G-protein signaling 22 OS=Mus musculus OX=10090 GN=Rgs22 PE=1 SV=1
Q8NE09	Regulator of G-protein signaling 22 OS=Homo sapiens OX=9606 GN=RGS22 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042651 all species →	Family	Regulator of G-protein signaling 22	Interproscan
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46583 all species →	REGULATOR OF G-PROTEIN SIGNALING 22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009468-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009468-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.2Max TPM

15.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.17	31.17
polyp at pH7 6	18	18	16.62	31.20
coral polyp · control treatment	16	16	18.38	30.13
coral polyp · oil and dispersant treatment	16	16	14.73	20.82
coral polyp · oil treatment	16	16	17.66	24.19
coral polyp · dispersant treatment	16	16	10.06	18.28
Polyp	10	10	11.50	20.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.84
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.31
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.10

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.