Gene detail

Detailed information of OS493_009514-T1 in Lophelia pertusa

Genomic Location: scaffold_22:3599591...3616253
NR annotation: KAJ7374172.1, Regulator of G-protein signaling 17 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49795	Regulator of G-protein signaling 19 OS=Homo sapiens OX=9606 GN=RGS19 PE=1 SV=1
O70521	Regulator of G-protein signaling 19 OS=Rattus norvegicus OX=10116 GN=Rgs19 PE=1 SV=1
Q9UGC6	Regulator of G-protein signaling 17 OS=Homo sapiens OX=9606 GN=RGS17 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001163 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10845 all species →	REGULATOR OF G PROTEIN SIGNALING	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_009514-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16449	RGS; regulator of G-protein signaling	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009514-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

42.7Max TPM

18.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.79	34.51
polyp at pH7 6	18	18	20.07	38.03
coral polyp · control treatment	16	16	19.17	31.27
coral polyp · oil and dispersant treatment	16	16	14.18	25.01
coral polyp · oil treatment	16	16	20.76	42.67
coral polyp · dispersant treatment	16	16	13.97	33.49
Polyp	10	10	18.77	41.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.21
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.85
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.33
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.11
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.98
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	41.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.