Gene detail

Detailed information of OS493_009536-T1 in Lophelia pertusa

Genomic Location: scaffold_23:16682...18485
NR annotation: KAJ7363384.1, Golgi vesicle prefusion complex stabilization [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCE1	DnaJ homolog subfamily C member 28 OS=Mus musculus OX=10090 GN=Dnajc28 PE=1 SV=2
Q9NX36	DnaJ homolog subfamily C member 28 OS=Homo sapiens OX=9606 GN=DNAJC28 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002595 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09350 all species →	DJC28_CD	DnaJ homologue, subfamily C, member 28, conserved domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052573 all species →	Family	DnaJ homolog subfamily C member 28	Interproscan
IPR018961 all species →	Domain	DnaJ homologue, subfamily C, member 28, conserved domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39158 all species →	OS08G0560600 PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_009536-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009536-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009536-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

95TPM > 0

7Conditions

16.6Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.67	4.32
polyp at pH7 6	18	14	1.40	3.39
coral polyp · control treatment	16	16	1.94	13.32
coral polyp · oil and dispersant treatment	16	14	1.32	12.92
coral polyp · oil treatment	16	16	1.31	2.33
coral polyp · dispersant treatment	16	11	0.33	0.82
Polyp	10	8	4.64	16.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.45
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.