Gene detail

Detailed information of OS493_009540-T1 in Lophelia pertusa

Genomic Location: scaffold_23:27938...41405
NR annotation: KAJ7363388.1, hypothetical protein OS493_009540 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_009540-T1

ATGCAGTGCCCCTTTTGCCAAGAAGAAGTTGGTAGCGCAGATGACTTGCAGTTACATTGCTTGGTCTGCACATCGGCCTATGCTGAGCCTGGTATTTCTGGAGCTCCCAGAACGGATTGTGTTGTAGTTCGTTTTCGCTGGGTAAAATCAAGACCATGTTTCGAGAGAGAGGTTCATCTCATAAGCTCGCTGGCAGGTTCTGTAAAACTCCACTGGAAGGAAGATGAAGCGTTGTATGAGTCAGAGACTGTTGGTGTTCCAGTTGGACATCACCTCTGTCAGTTAGCTATTGGTGGTGATGTTGTTCCTACTGAAGAATTTGAAGTCAATGATGACAGTGATGTTATTTTTATCATACTTCAAGAAGCAGCCAATTATGGATACCTGATGTTTGATGAAAGTGACAGGAGGGCAAGGGTCAGTGCTGGTGATGTAGGATCTGATGGTGAACCAGAGCAAGTGGATACACATGACGACAGAACTCCGCGTCCACTTGACATGGAATCAAGGGAGAACCAAACTGAGAATACAAATGTAATGAGTCCACTTTACAGAGAGCTACTACAACACCAGCTCAGCCATGGCGAGCCTTCCTGGGTTCCAGGAAGTGGAGTTCAGTCACCTGTGATGTCGGATGTTGACTTAAGTGAACTTGCTGGTCAACATGATGATGATGATGAACCTCCCATACTGACGCCCCAGCCAGATTCTATAGAGGAACTGCAGCCATCAAGTCCTGTTCTGTTGCAGCCAGGACTGGAGGAAGAGAGTCGACCAGGAGATCTGTCTGGTGAAAGTGATGGTGTGCTGTCACTTCCTGATGGTAGAGGAGCTGATGATCAGAGTGATAGTGAAGCAGAGGAAGTGCTTTCTAGTTCAAGGCCTCCAGCACCACCCTCATCCTCCTCTCCAGTTCCCAACAGCCATAGTGAACACGACAGCCGAGTGTCTTCAAGAGAAAGTCCTGTCAATAGTGTACCCAGTGAGTCAGGTGCAAGAGATGACTCTGTTATAAGTCCCTTACTATATGAGGCCTTTAGGCATGACAGCCCACCTCCAATTACTGGAAGCCCGTTCACTGAAGGAGAACACACAAATGTTGTTCCGCCATACACCTCCCCGCAGACCACACCTGGCAGAGATAATAACTCCACAGAAGAAACAGATCATGTACCTTCTACAGTCCAGACCCCAGCTGAAGAGCACCCTATAGAACATGCCCATTCGTCTCCTAGGGCCAGTCCTCTGGGCTCGGCCGTTCTGGTCCTGGATGCTGTCATAGTTCCCAGCACACTAGATGCATTACCAAGTGACCATGTAGCCACTTCACCTCCTGAACGGCACAGCCCGGCAGGATCAGTCCACAGTAGTTCTTTGTTTTCATCTGGTTTACCAACTCCTATTATGTCTCCAAGAGCCATTCAGTCTGATACAGGCATGCCATTGGCTTCAAGAGGAAGCCCTCTTGGATCCATTCAGCTTCCGCTGAGACCCCAAAGTCTGGGTGGCTCAATTAACCTCTCAGAAATGGTCCCAGTGTCAGAGGACTTGCTGACAACTCTGAACTCTGCATCACATTTGGAAAGTCCTCGAGGACCAGTTTCTGGTGCAGAGGAGTCCCCAATCTCTCCTGCTCTAAGGCAGAGTCCTACAGGGTCCAATCACAGCACCAGCGTTCATCCCCAAGGAGGGTTAGGCTTGGCAGATGATGCTAGCAGACACTCAAGCCAGAGGAGTACACCAAGAACCTCACATTTGAGTCATCGTGAAAGTGGGAACAGTACACCTTCAGTGCCCAGTCCAAGGCAAAGGACATCAGCAGCAGGAAGTCCCACAGAGCTCCTTATGGAGACAGTTTATAGGCGAGGTAGCGGTACACCTCCAGTATCCTCCCATGATGGATCTACAGCACCAACACCTCCTGCGATGCCATCAACAAACTCTAGAGTAAGCCATCGAGGAAGTGGCAATAGCACACCATCTGTGCACAGTCCAAGACAAAGGACATCAGGAACAGGAAGCCCATCGGAACTTCTCGCAGAGATAGCTTATAGACAAGGTACACCTCCAGTATCCTCCCGTGATGGATCTACAGCAGCAACACCTCCTGTCATGCCATCAACAAGAGTAAGCCAGCGAGCCGGAAGTGGCAATAGTACACCATCTGTGCACAGTCCAAGACATAGAACATCAGGAGCAGGAAGTCCAACAGAGCACCTTATGGAGACAGTTTATAGGCGTGGTAGTGGTACACCTCCAGTAGTATCCTCCCATGATGGATCTACAGCACCAACTCCTGCTGTCATGCAATCACCAAGCTCAAGGGTAAGCCATCGAGGAAGTGGTAATAGTACGCCATCAGTGCACAGTCCAAGGCAAAGGACATCAGGAACAGGAAGTCCATCTGAACTCCTTGCGGAGATAGCTTATAGACAAGGTGCACCACCAGTATCTTCCCGTGATGGATCTACAGCAGCAACGCCTCCCATGATGCCATCAACAAACTCAAGGATAAGCCATCGAGGAAGTGAGAATAGTACATCCTCAGTGCCCAGTCCAAGACATAGAACATCAGGAGCAGGAAGCCCCACAGAACTCCTTCTGGAGACAGTTTATAGGCGAGGTACCGGTACACCACCAGTATCCTCTCGTGATGGATCTGCAGACGCAACTCCTGCTGTCATGCCATCAACAAGCTCAAGGGTAAGCCATCAAGGAAGTGGCAATAGTACACCATCAGTGCATAGTCTAAGACAAAGGACATCAGGAACAGGACGCCCATCAGAACTCCTTGCAGAGACAGTCTACAGGCGAGGTACACCTCCAGTGTCTTCACACGGTGCTCCCAGTAGGACATCTAGACAGCAAAGCCCAGCTACCTCAGTTCACAGTCGAGCTGAGCATTCCTCTCCACGTGTCTTATCCCCTCCATTTCCTCACGAATCAGCTATTCCAAGCCATGGAAGTGCATTTGCCACTGTGAATGCAGAGTTTGGATCACCTGCAGTGGGACTGTCCTCGGAGGTAGAGGCTCTCAGGCAGGAAAGGGATACTCTGGCCAGGGAGCTGAGACAGAGGGCCGCTCATTATGAAGCAGAGCTCAGGCGGGTCAGGTCCAGAAATGAGGATCTTGAACAACAGATGCTTAGCATTGAGACCGTAGCCACTCTTACCAAACAAGATGACGAGAAGACACAAGAGCTGGAGCATACAGTGCTGGATCTCAACAGAACTTTGCGAGAGAAAGACGAGGAAATAAGTTCACTGCAGGAGTCTGTGAGGGGACTGGAGAGAACCAATCAGCAGTTAAAGGAGGAGCAAGATAGTTTGAAAACTGTCAATGAACTGAGACTTGAAGACATGAACAAACTCAACTCTGATCTCCAGCAAGAGCTGTCAGATTTACAGCGAAGATCTCTGGAATCAAGCCGAGCCTCACGAGGCAGGAACGAAGGCAAGATCATCGAGCTTCAAGTGCTTCAAAATACGCTCCAACAGCACGTTCAACGACTTCAACTGGAGAACGAGAATCTCCAAACAAAGCTCAAACAAGCAAAGCAGGAAATAAACACGATGAAGGCAATCACAACAACCAGGAACGGCTCAAGACTCAGCAAAGCCAAGAGCGAAACAGACTTGTCAAAGAGATTCGACAAATACACCATGTACGACAAACACAGATACAGAGATCCGGAGCCCTCCAAGACTGTTAGCTTCGCCACGAGAAGCGACAGCTCGGGGCTCGGAACAACTCGGTTTAGTTCGTCGGATGCGAACTACACCCGATCACACGAAGTTGGGGTGTCATCTCCTGTTATAATGAACGGTTATAGCTCGCCAAGGTCAGAAGCTAAGAGATTGTCGTCGTCGTGTGCTTCCCTCCACGACAGGCTGATGCGTGAGCCGCCCACCAGCAGAACTACAGTCCCAAGGCACCGCGTAGGCTCCTTAGGGGAGGACAGCGATGTGTCTGATGATCTAGAGCATGGTGTGGGGTACCATACTGCAACTCAACCAAGATGGCGCACACAGAGCTCCGAGTCTTCAGCTTCGTCGGTTGTTTCGCGGGATCACGACTACAGTACAGATGCGGCGAGGCAGCCAAGAGCGAGCATCTACACCCCGAGCTCGTCTGTGTATGATCAGGATGATTGGGTCAGCGGACGTAGGAGGAGGCCGCATTCATATCACGGAGCAACGGGATCCCTCAACGACGTTCACGGCGCGGGGAAAGACGATTACACTTCTTCATACAACGTCAAGTCTTCACCTTACTCTCACTCACTGCGTGATGTCGGCCTCCATTCTACCTCTTCATCGAGTTATTCCACTAATCCACAGCAACTCACCACGACTCCATACCTTTATCCTCGCACAACTACGAAACTGTTCACCAAGCCATTTGCGCCTTCGTCAAGCGGCGACATTCAGTTGGGTATGGAGGTACTGGTAACTAGGTCACGAGGACAGATTGGCCGCGGTGTAGTGAAGTATGTCGGGCCGTTACCAAGCCGCAAAGACATGTACATCGGAGTGGAACTGGGACCGGGTCAAGAAGGAAAGCACGACGGATCTTTGGATGGACAGAGATTATTTTCTTGTAAACCAAACCGAGGTATCTTCGTCTCCTTCAACAAAGTCGTCATGTGTTATGGTTAA

Transcript

OS493_009540-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U378	Tubulin-specific chaperone E OS=Danio rerio OX=7955 GN=tbce PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002571 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18867 all species →	RAD50	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000722 all species →	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000794 all species →	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691 all species →	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880 all species →	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192 all species →	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305 all species →	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009540-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009540-T1 global co-expression network