Gene detail

Detailed information of OS493_009542-T1 in Lophelia pertusa

Genomic Location: scaffold_23:48688...66015
NR annotation: KAJ7363390.1, hypothetical protein OS493_009542 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_009542-T1

ATGGAGCAACCCCAAGGTGCAAACAACAGAGGTGGCAGAGGAAGAGGTAACAACAGGGGTAGGAGAGCCAATGGAAATGGCAGAGGGGGTAGGAGAGCACCTCAGAAACAAAGGATGTGCGAGGACTGCGAGGAGAATGCAGCTACTCAGTTCTGTGCCGATTGCCTTCCACCATTGGTTCTTTGTGATGACTGTGCAGTTGTGCTCCACAGGGGGGCAACAAGAAGAAATCACCTGTTGAAAGATGTCCTAGATGCACCTGCCCCAGTAAAGGACAAGGGCTACACCCCTAAAGCATACAGGTCGCCATTTGCCATGTTGGTGGCATTTCACAGGGCTTTTAATGAAGTTCCCCGCAAAATGAGTTTAACTGCAGATGAGCTGAAATCCAGAGCACAACCTCTAACAAACACAGATTTGGAAATCAAACAAGGGAGATGGGGAGGCTTTGATTCAATGGAAACTGCCTTGATGAAGAATGAACTTGTACAGAAGGAAGCTGAAACACCTAAGTACTCCCTCGTGGAAAAAGGCCAGCCCTTAGCTGCAAGGTGCTCAGAATTTGATTATGCTGTTCAGAATCTCACTCAAGCGGCTTCAGTTCCAACTATACCGGTCATGGCGGCAAGGCCAGTGTACCAAAATCGTCAGGTATGCTTGTTAGTAGACAGCGAAGAGCCATTGAGGGAGAGGTTTGTTAGAGTGGCACTACAGCGAGGACTGTCAGCAAAGACAAGGAAGCTCCCTGTGGGGGATTTCCTGTGGGTGCTACTTCCCCCTGGAGTGAATCCTGGCACGGTCAGAGATATGCCAGAACAGGAACTGGTTCTTCCTATGACTGTGGAGAGAAAAACATGGGATGACTTGTGGTCCAGTCTCAAGTCTACAAGATTTGTGAACCAAGTCCATAGAATGAAGAATTGTGGTTTAGAGAATCTTTTCTATCTGGTGGAGGGTAGTCCTAAAGATCTAAAAGGAAAGCCAGGTCCTGAGGTTGCAAGTTACCTGCAGGACAAACTTGATAGTCTGCTTTTAGAGGACCAGTTTCTTGTGAACCGCACTGGCTCTTGGCTAAAAACTGTGGAATGGCTGTGCCATTTAACCAACATGGCAATTGAGTCCTTGCAGTCAGAAGGAAGTCCTAATTTAATGACATACAGTGAATTTTCAAGGGGAGGTAAATTACAAAGGAACCTAGCCAGTATTGGTACAACAGCTGCTGTTCCAGTTACTTCTACTGTTTGGTCAGCAACAGAATTTACAGATATTATACGAAGCCATAGCCGTGGTGGAATGGAGCTCAGCAATCTACCTGTCAGTGGTGGATATGGTTTCAAAGAAGAAAGATCTTTGATTGTGATCCAAGGCCTTACTCTTTATAATAAGCAATGTCACAAGTTACTGGACAAAGCTCTTGCTAACCTCTTGGAGAACACACATCAAACTGCAGAAGCTTGTGTTCAAAGACATCTTCAAGGTGTCACAGACCAGCTGATTCATGAGGACGTTCCACAGTGGTACATTCTCTGGCTACAGGTTTTTAAAGGAGTGCTGGTGCGTAGAACAGATACTGAAGAAGAGTCAGCAGAAATTCTGGGCAAATTTTATCAAATGTCAACAGGTGGTGTAGATGCTCTTCCACGTAATGAAGAAATTGATCATATTAGCACGCAAGAGGAGGAAAGGCTGCCTGAGGGTGACCTTATATTTGCTAGTGATTCTCAAGAGGAAGATTCAATGCTCCGTCAGGCTCTAAGAGCATCAGCGTATGAAGACAAAATGCCAGAGGATGTCTTACACCCTTCCTTGGTTAGACCTCCAAGTAGCACCACAACAAAACCATCTGAACAGTTGGTTCCCAGCAGTTCAGAGCATGGATTACTGAAATATCCCCTGGATTCCATGAATGAAAGTGAACAGCTCGAGCTAGCTATGAAACTCAGTAATGCTGAAAATGAAACACCTGGATCTCACAGCGGGCGTAGTCTAGGTTTTAATAAATCCCCTGCAAAAAGGCCTGTTACAAGTTGTGCAACAGAGCAACACACAGCTAGCTCACACACTCCTGTTAGGCCAAGGACTAAGATGGAGGTGCGTAGCCCAACACATACAGCTGTTTGTGATCACAAGACAAAAAGTGATAGTCCAAATGACGAGCTTGAGAAAGTACTTAAACAAAGTTTGGAAGAGTTTGAAAACATGAAAAAAAAACAAGACCACAGAAGGAACACATCTAACACGGATAGTGACCTGGCGAAAGCTTTAGAACTAAGCAGATTGGAATGTGGTCAGTCGAGGAATAACACCATGAGCCACAAGGTGGAACAACAAGGTGATATTGGTGGCCCATCTGACAAGGATGAAGAGCTAGATAAAGCATTGGAATTAAGTAAGTTGGAGGCTGAAACAATGAAAAAAGAACATCACTGTGTTGATATCACTGATGTACATGTCCCCTTGGAATTGAACCAAGCAGAGGTAGAACAATCAAGGGAAAAAGAGAAAATGATCCATGAACAAAGTACAACAGATACAGACCTGCAAAAAGTCCTAGAACTGAGCAGAGTGGAATATAAACAATGTGAGACAGATACTGTGATTATGTCGAATGGTGAGGGTCAAAGAGAGGCAACAATCATAGACCCTACATCCAAACATGAGGAGGACTTGGCCAAAGCCTTAGAAATAAGCAGAATGGATTGCAAACACTTAGAACGGAACATTGGCAACGATGTTTTAGGCAAGGCAACACAAAACGGTTCAATGAAGAGCGAAGTAGATGATGATGATGTAGCAAAAGTGTTGAAACTGAGCAAAACGGAATGCAGCAAACCAGAACGAAGCATTGGTTTACAACATTTGGATGAGAGGAAAGAACAAACCAGCAGTGATCTTGAAAGGGCCTTAGAGTTGAGCAGAATTGAATACACACAATCCAACAATTGCAGTTTGGATGGAAAAAACGAAGACTCAGATTCAGATATAATTATTATGGAAGAAAATGTTGGCGATGTCCCAGCAAGGAAAAGAAGTGTTCCTGCTCAAACAATGAAATGTTCCTCAACACCAATGAAAAATTCTCCTTTGATTGATGCTGATGTTGACATTGTTCCTTCCAGTGTAACGTCAGAATGGGATCCAGATCCTTTTGATGCATTGGATCATGCCACACCAGCTGGTAGCTCAAAGTATTCTGCTATCATGTTGGACTCCCAGGAACTTGATGATGAGTTCTTGGATGCACCAGTGCTTCAGTTGGACGACACTGCCAAAACTAATAGGAAACAGCTATTCTCGTCAGAAGAAGAAAACACTGTCGATGATGACTTTGCGTATGCATTAAAAGTCCAAGAAGAGCTGAACAAACCAGCTAAGGGCCCTGATAATCATCATGACTCTCCAAGTAAGAGAAATACAACTTGCCTTGAGCTTGACGACCAACTCACATGTTATCGTGAGTCACAGAAAGAAAGATATGGTACACACTCTGGAAAGGGAGACAAATCTACACGTGGATTTGATTTCAGGAGAAATGTGGCTGCAATTGCCTGTGGCAAACCAGTGCAAATTGGCATTGCAAGCCCCATTAGTAGGCCAGGTAATTCTCAGAAGAGGCCGGATTCACAAAGAGTGCTTGGCGACAAGCCATTTCCTGGTAGCAGAATTGACAGAGACAAAAATCAGGGTCCTCGCAAAGATGAAGCGTATGTCATAAGGGATGATGATGCAGGGTCTAAAACAGTTGGTTCAGCATCCAGGAGCGTAATGAAAAGTGGTGAGAGATCTTTTGTCTCCCAGTCAGGAACTACATCATCTCCAAGGCCATTTTCATCTTCTGCCAGCAGCAGTTTTGAAAGAGTCCACAGACGTGATCCCCCTACTTTCTCAGGACCTTTTTCGCCACCCTCTACTGTTGATTCACCATCTGTTACACCTTCAATATCAAGAGATACATCAGCTGCAAGTCACAGTAAAAGCAGCAGTGACAAGCCAATGGGACCCAAGTGTGGGGCTTGTGGAGAAGTAGGACACGCCAAAACGTCAAAAATGTGTCCTCATTACTACTCTGCAGAGGCTGTTCAAAGGAGAGAGGAACAATCACGAAAGAGGAAAGCAAAGAAGGAGGAGGACGAAAGAGACTTTAATGATAACCTGGGTGCATTGGCTGCTCAAAGATTGGTAATCGAAGAACAACTGAATCAGCTGAGACAACAATCACAAAACATGGCAAACACTCAAAAAAAGGTAGAGGATGCAATTAAACGAAGAAGAAAGAAGTAG

Transcript

OS493_009542-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008798 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15288 all species →	zf-CCHC_6	Zinc knuckle	Domain	Interproscan
PF02732 all species →	ERCC4	ERCC4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041670 all species →	Domain	Zinc knuckle	Interproscan
IPR047416 all species →	Domain	MUS81, XPF-like nuclease domain	Interproscan
IPR006166 all species →	Domain	ERCC4 domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR033309 all species →	Family	Crossover junction endonuclease Mus81	Interproscan
IPR047417 all species →	Domain	MUS81, winged helix domain	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13451 all species →	CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0006308 all species →	Biological Process	DNA catabolic process	Interproscan
GO:0008821 all species →	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048257 all species →	Molecular Function	3'-flap endonuclease activity	Interproscan
GO:0048476 all species →	Cellular Component	Holliday junction resolvase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009542-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009542-T1 global co-expression network