Gene detail

Detailed information of OS493_009597-T1 in Lophelia pertusa

Genomic Location: scaffold_23:622335...626883
NR annotation: KAJ7363443.1, Syntaxin-binding protein 5 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WU70	Syntaxin-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Stxbp5 PE=1 SV=1
Q8K400	Syntaxin-binding protein 5 OS=Mus musculus OX=10090 GN=Stxbp5 PE=1 SV=3
Q5T5C0	Syntaxin-binding protein 5 OS=Homo sapiens OX=9606 GN=STXBP5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004407 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00957 all species →	Synaptobrevin	Synaptobrevin	Family	Interproscan
PF08596 all species →	Lgl_C	Lethal giant larvae(Lgl) like, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042855 all species →	Domain	v-SNARE, coiled-coil homology domain	Interproscan
IPR013905 all species →	Domain	Lethal giant larvae (Lgl)-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10241 all species →	LETHAL 2 GIANT LARVAE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017157 all species →	Biological Process	regulation of exocytosis	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0045159 all species →	Molecular Function	myosin II binding	Interproscan
GO:0050708 all species →	Biological Process	regulation of protein secretion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02757	bglF, bglP; beta-glucoside PTS system EIICBA component	EC:2.7.1.-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009597-T1 global co-expression network