Gene detail

Detailed information of OS493_009600-T1 in Lophelia pertusa

Genomic Location: scaffold_23:639196...639998
NR annotation: KAJ7363446.1, hypothetical protein OS493_009600 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95822	Malonyl-CoA decarboxylase, mitochondrial OS=Homo sapiens OX=9606 GN=MLYCD PE=1 SV=3
Q99J39	Malonyl-CoA decarboxylase, mitochondrial OS=Mus musculus OX=10090 GN=Mlycd PE=1 SV=1
Q920F5	Malonyl-CoA decarboxylase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mlycd PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003729 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05292 all species →	MCD	Malonyl-CoA decarboxylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038917 all species →	Family	Malonyl-CoA decarboxylase	Interproscan
IPR007956 all species →	Domain	Malonyl-CoA decarboxylase, C-terminal	Interproscan
IPR042303 all species →	Homologous_superfamily	Malonyl-CoA decarboxylase, C-terminal catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28641 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0005782 all species →	Cellular Component	peroxisomal matrix	Interproscan
GO:0006085 all species →	Biological Process	acetyl-CoA biosynthetic process	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0050080 all species →	Molecular Function	malonyl-CoA decarboxylase activity	Interproscan
GO:2001294 all species →	Biological Process	malonyl-CoA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009600-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009600-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

32.8Max TPM

10.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.26	17.31
polyp at pH7 6	18	18	13.13	22.16
coral polyp · control treatment	16	16	9.98	30.55
coral polyp · oil and dispersant treatment	16	16	7.55	16.83
coral polyp · oil treatment	16	15	9.64	24.57
coral polyp · dispersant treatment	16	16	4.22	11.35
Polyp	10	10	17.74	32.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.62
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.74
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.74
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.