Gene detail

Detailed information of OS493_009621-T1 in Lophelia pertusa

Genomic Location: scaffold_23:814097...819688
NR annotation: KAJ7363466.1, Chromatin modification- protein meaf6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58CU0	Chromatin modification-related protein MEAF6 OS=Bos taurus OX=9913 GN=MEAF6 PE=2 SV=2
Q9HAF1	Chromatin modification-related protein MEAF6 OS=Homo sapiens OX=9606 GN=MEAF6 PE=1 SV=1
Q2VPQ9	Chromatin modification-related protein MEAF6 OS=Mus musculus OX=10090 GN=Meaf6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09340 all species →	NuA4	Histone acetyltransferase subunit NuA4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015418 all species →	Family	Chromatin modification-related protein Eaf6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13476 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0035267 all species →	Cellular Component	NuA4 histone acetyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11344	MEAF6, EAF6; chromatin modification-related protein EAF6	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009621-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

149.9Max TPM

48.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	41.70	57.04
polyp at pH7 6	18	18	42.19	63.93
coral polyp · control treatment	16	16	57.92	149.90
coral polyp · oil and dispersant treatment	16	16	60.24	88.09
coral polyp · oil treatment	16	16	52.19	75.70
coral polyp · dispersant treatment	16	16	38.81	60.37
Polyp	10	10	47.49	67.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.65
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.24
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.90
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.25
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	67.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	63.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	58.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	57.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	48.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	37.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	31.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.