Gene detail

Detailed information of OS493_009629-T1 in Lophelia pertusa

Genomic Location: scaffold_23:900426...910720
NR annotation: KAJ7363474.1, hypothetical protein OS493_009629 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N3L3	Beta-taxilin OS=Homo sapiens OX=9606 GN=TXLNB PE=1 SV=3
Q8VBT1	Beta-taxilin OS=Mus musculus OX=10090 GN=Txlnb PE=1 SV=2
Q9NUQ3	Gamma-taxilin OS=Homo sapiens OX=9606 GN=TXLNG PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007777 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09728 all species →	Taxilin	Myosin-like coiled-coil protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026183 all species →	Family	Taxilin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16127 all species →	TAXILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26808	TXLN; taxilin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009629-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

47.7Max TPM

25.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.04	32.81
polyp at pH7 6	18	18	25.83	32.69
coral polyp · control treatment	16	16	31.75	47.65
coral polyp · oil and dispersant treatment	16	16	24.04	33.88
coral polyp · oil treatment	16	16	27.21	35.87
coral polyp · dispersant treatment	16	16	19.63	30.53
Polyp	10	10	25.92	36.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.41
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.13
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.20
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.54
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	36.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	33.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	27.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	24.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.