Detailed information of OS493_009679-T1 in Lophelia pertusa

Genomic Location: scaffold_23:1544108...1556065
NR annotation: KAJ7363524.1, Protein kinase C conserved region 2 (CalB) [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9R0Q1Synaptotagmin-like protein 4 OS=Mus musculus OX=10090 GN=Sytl4 PE=1 SV=1
Q8VHQ7Synaptotagmin-like protein 4 OS=Rattus norvegicus OX=10116 GN=Sytl4 PE=1 SV=1
Q8TDW5Synaptotagmin-like protein 5 OS=Homo sapiens OX=9606 GN=SYTL5 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000239 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00168
all species →		C2C2 domainDomainInterproscan
PF02318
all species →		FYVE_2FYVE-type zinc fingerFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000008
all species →		DomainC2 domainInterproscan
IPR035892
all species →		Homologous_superfamilyC2 domain superfamilyInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR041282
all species →		DomainFYVE-type zinc fingerInterproscan
IPR010911
all species →		DomainRab-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45716
all species →		BITESIZE, ISOFORM IInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006887
all species →		Biological ProcessexocytosisInterproscan
GO:0042043
all species →		Molecular Functionneurexin family protein bindingInterproscan
GO:0070382
all species →		Cellular Componentexocytic vesicleInterproscan
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0031267
all species →		Molecular Functionsmall GTPase bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_009679-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_009679-T1 global co-expression network
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