Gene detail

Detailed information of OS493_009682-T1 in Lophelia pertusa

Genomic Location: scaffold_23:1576516...1582112
NR annotation: KAJ7363527.1, Lactation elevated protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WV93	AFG1-like ATPase OS=Homo sapiens OX=9606 GN=AFG1L PE=1 SV=2
Q32PX9	AFG1-like ATPase OS=Rattus norvegicus OX=10116 GN=Afg1l PE=2 SV=1
Q3V384	AFG1-like ATPase OS=Mus musculus OX=10090 GN=Afg1l PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001828 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03969 all species →	AFG1_ATPase	AFG1-like ATPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005654 all species →	Family	ATPase, AFG1-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12169 all species →	ATPASE N2B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009682-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009682-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

32.2Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.48	5.03
polyp at pH7 6	18	17	3.18	6.51
coral polyp · control treatment	16	16	11.33	25.31
coral polyp · oil and dispersant treatment	16	16	16.12	32.19
coral polyp · oil treatment	16	16	8.50	12.34
coral polyp · dispersant treatment	16	16	11.10	23.98
Polyp	10	10	5.13	11.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.22
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.19
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.58
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.55
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.56
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.51

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.