Gene detail

Detailed information of OS493_009687-T1 in Lophelia pertusa

Genomic Location: scaffold_23:1654735...1656744
NR annotation: KAJ7363531.1, Transient receptor putative cation channel sub M member 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7T1N0	Transient receptor potential cation channel subfamily M member-like 2 OS=Nematostella vectensis OX=45351 GN=TRPM2 PE=1 SV=1
Q8BVU5	ADP-ribose pyrophosphatase, mitochondrial OS=Mus musculus OX=10090 GN=Nudt9 PE=1 SV=1
Q5XIG0	ADP-ribose pyrophosphatase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Nudt9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001986 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_009687-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR039989 all species →	Family	ADP-ribose pyrophosphatase, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13030 all species →	NUDIX HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0047631 all species →	Molecular Function	ADP-ribose diphosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009687-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009687-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

35.9Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	11.93	35.66
polyp at pH7 6	18	16	11.97	35.92
coral polyp · control treatment	16	15	7.67	31.02
coral polyp · oil and dispersant treatment	16	15	3.03	18.25
coral polyp · oil treatment	16	16	5.86	23.36
coral polyp · dispersant treatment	16	16	6.25	23.15
Polyp	10	9	9.41	23.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.19
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.