Gene detail

Detailed information of OS493_009770-T1 in Lophelia pertusa

Genomic Location: scaffold_23:2475842...2484255
NR annotation: KAJ7363608.1, F-box only protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_009770-T1

ATGGGAAACGTTCCTCTACAGAGTGGAGTGAAGTACGTAGTCACAGTGGTCGCTGAAGGTTCGGACGCGCTCCATCTTCCAAGTTTGCTGTCTACAGGAGACACGGAGTTCGCCCAATTACCAAAACCAGCCTCTGTTAGTCAAGAATACTCTTTTGAAGAGAAAGAGATCAAAGTTACTTTCCAGCCCGTTCCTGATGCATCTGCACACTTGATTGAAGTTTTCAACGAGATCACGCCTACCAAAATAGCAGGCAAACACGTTGTTACAAAGACAACTTGTGTCGACTGGCCCTCAACTGTAACTTACTCGTTTGACGTCGATAACATGAGATTTAATGGTGGCGCCCAGTTCAAGTCACGAGTCATTGCCCAAGGTAATGCACACTGGATGAACAGTTCACCTTGCTTGAGCTCTTCCGCGTTTGCGTGCAGCGTTGCAGCGATCAGTGTGGCATTAAAGTACAGCGTCGAGTCAAAGAAACTCAAAATCGTCATCTCTTCAAGACCTGGACACTTTACTGCACAAATAGAGGACACTTCTCACAAAGGTAGAACAATCAGCACACAAAAATTTATTGTTAAACGGGACACTGAAAAGGACTCCGTTCACCAAACTTTGTTGGAGATTCCTCTAACCTCAGACGAAGAGCCGCGAGGTGCAATATATCAAGCTTTCGTTCTGAACACCGGTGATCAACAACACTTGCCAAGCGAGGTTAAACAATCAAACGAAGTGCCATTACTAGATCCGCCAGCTTCTGTGTCACAAGAATATAAGGACGGTGTCTTCACTGTAGTCTGGAAATGCGTTCAATCGGCAACCTGTTATCACATCAGAGTTTACAACACTAAAACTGGAAGCACAGCTTCCGAGGTGAGCGTTACTAGTGATGTACGTCCCGCTGGAGAACAGATGAAGAAAGAGTTTGATGTAGATTCAATTCTACTGGAATCGGACGGACTTTACCAAACATTGGTGATGGTCTTGGGAGATGAAGTCAGTATTGGAGGAGCCAGCACCAAATCCAACACGACAATAACGTCTTTTCCCTCTCCGGAAGACGTCAAAATTACCTTTAACAACGAAACGCGTCATATGCTTGTAAGCTGCTCTTCTGTAAAAGGCGCTGTTTCTATCAAGCTTGGAGTGGTCGACGCTGGTAAACTGAAAAACGATGAAACGAATATCCAAGGGGCGTTATTGGGATCCAAAGAAGTGGCCGTTACTTCCAGTGATGCCAGTAAACCTGTAGAAGCAGAATTTGATGACAGTGTGCTCCTCACGTCCCTAGACGGCCTACACAGAGGTGTGGCACGGTTGATGGTAAAACACGCGGAGGTTTCTCTTCCAAGTGGATATTCCATTTCTGATGATGTGGTGGCTTGGTTGAAGCCGCCTGTACCGATTCACATGTATTTCGATCCTGTCTATTCAACCTTGAAGATAACCTGGACTCCCGTTAACCTGGCGCTTCGATATTTGGTAGAAATCCTGCAAGGGAGAGAAGATGAGGATGGAACTACTACATTGATCCCATTTTCAGACGAGGTGCACGGTGATGCCATTTCTTGTAATGTCAACATGGAAAACGTAAACGTTGATGAAAGTGACAAGTTTATCGCCAAAGTTCAATCGATTGGAAATCCAGGAACTGTGATCACAATTCATTCCACTGGTTATTCTAGCGAGACCATGGTTTGCGAGAACTCTCCAACTGACGTTGAAGTTTTGCAAGTAGAAGACGAAACGGTGAGAGTGACCTGGAAAGGAGATTCAGCCACCACTTTCCAATTCAGTGTTTGGAGAATGTCAGAGTCAGGAGATCAAGACGACGTCATTAGCAAGCAAACTGATACGCTCCAACTGATATCGACATCAGAAGCTCTACGCATGATTTCACCTGGCCGGTACAGATTTGGCGTTCGATCTCAGGGATCTATTAGCAAGTTACACAGTGTTTACACATACTCTGATGTCTTGGCTGTCATCATGGATGCTCCAACTGTCACTACTATGAAGCGGCGCCCTGCAGTAACGGTGAAGTGGACTCCAGTTGACAACAATCCAACTCAGAACTTCTCAAACTACGTCATCCATTATCGGCTTCAGCGAGGTGCAGAGTCAGAGTGGAATCAGGTGCAAGTTGAAATATCGGCGAAGGAGAAAATGATCGTAGATTTGCAACCCGACAGCGACTATCTCTTCTGCATCTCTGTTGCGAGTCCTAAGCTAGGGAACGGCATTAGAAGCCAAGCCACAGCTGTCCACACAGAGTTTGACGTTAGATTGCCAGGTGATTTGTTGGACAATCCAAACTTCGCGCCCGCGGAAGGCTGGGATGAGCATGGCTATACTTACAATATCATCACGGAACCTTGGCAGATAATACAACCAACTGACAGGCAATATAGGCTGGAAAACACACATCAAGGAACTTCTGACTGGCCGGATTATGATGGGACTATAAACCGCTGGTGTGTTGCAGCCGCTAATATGGGACGGTTCAAGTCTTGTTGGAGGATTCAACTGATCGATCTGCTCGAAAAAGGCTTTACTCCTGAATATCTAGATGAGGTGAAGCCAGACATTGAGGTTTACGAATGGTTTGCCATCCAATCAGGTTGCTCGAGTACGTATGACATGAAAGTGTCTCTTCTAGACAGCAACAAGAAAGATCTTCCAGGCGAGAACTTCTATTTAGCTCATGTTAAGCCCGCTCCAACTGATGGATCATGGAAACGTCTGGAACACACGTTTTCCAATTATCCTTCGGGTTTAAGGTTCATACGATTTGAAGATGGTATGCAGAGCCTTGGGTTGGACTTACGCGCTTATGACGTAAAGGCTTTTGCACCTACCGTGAAGATTTCTGAAAGGCAATCTTTGGCGAAGAAAGATGAAGTGACTAGCCATTGA

Transcript

OS493_009770-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011695 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04300 all species →	FBA	F-box associated region	Family	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007397 all species →	Domain	F-box associated (FBA) domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR039752 all species →	Family	F-box only protein	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12125 all species →	F-BOX ONLY PROTEIN 6-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009770-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009770-T1 global co-expression network