Gene detail

Detailed information of OS493_009790-T1 in Lophelia pertusa

Genomic Location: scaffold_23:2703635...2714232
NR annotation: KAJ7363628.1, ATP-binding cassette sub- B member 7, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_009790-T1

ATGGCGCCGATGTTCAGAACATGTTGTGGTTTTCTTCGGATACACACGGCCTGCAAAGTGGCTAATCCTCGATTGTGCATAAAGACAGGTTTGAATGTTGGATCGAAATATTGGTATAGATCGCCTGCTTTACAGAAATCATGTGGACATCATGTAAAACCCAACATAGCGGTAACAAAGATATTGCCTTATATGAGCCGTAGATTTGCTTCTTGTAAGCCAGGACTCCTCTTTGTGAGTAAGCGACAGCAGCATGGAGGTGCGAATGTGACAGCAAAAAGCCTCAAGGGCTTACCTTCCTCAACTGGCGTGACAATACTAAAGAGAATGTTGAAACATGTGTGGCCCAAGGACAGACCTGATCTCAAGAGACGAGTGGTGGCTGCAGTTGTGCTGCTCATCGGGGCAAAGCTGATGAATGTACAGATTCCATTCTTGTTTAAGTATGCTATTGATTACCTCAATAACTTGGATTCCGCTGCCCTGGTTCAGACGGCAGGTGGAACTGTCTTCACTGCACTGACGGCACTGCTCTTGGGATATGGAGCAGCCCGGGCAAGTGCCTCTCTTTTCAATGAGTTGAGAAATGCTGTGTTTGCCAAAGTAGCTCAAGGGTCTATTCGCTCTGTTGCAAAAAGGACATTTCTTCATCTTCATAACCTGGACCTGAACTTTCATCTGAAGAGGCAAACAGGTGCTTTGTCCAGAGCCATTGACAGAGGAACTAGGGGTATCAACTTCATTTTGAGTGCATTGGTGTTTAACATTTTCCCAACAATTTTTGAGGTGTCGCTTGTATCTGGAATACTGACATACCGCTGTGGCAAAGAGTTCGCACTGGTTACACTAGCTTGTCTAGGAACGTATGCCGCATTCACACTCTTAGTTACAAAATGGAGGACCAAGTTTCGTGTTCAGATGAACAAAGCGGATAATGAGGCAGGATCTCAAGCCATTGACTCTCTCATAAATTACGAGACAGTAAAGTATTTTAACAATGAACAATTCGAGGCCGAGAGATACGACAAGTTGCTAGCAGATTACGAGAAGGCCTCGCTCAAGACAACCACAAGTTTAGCTCTGCTCAGCTGGGGACAGAACTTTATTTTCAGCGCTTCACTGAGTATAATCATGGTACTGGCCAGCAGGCAAATCCTACAAGGTACCATGACAGTAGGTGACCTGGTAATGGTGAATGGCCTGTTATTCCAACTGTCCGTACCACTTAACTTCCTTGGCTCTGTTTATCGTGACATAAGGCAGGCACTGGTCGATATGCAGACACTGTTTGACCTTCACAAGGTCTCATCTTCCATCAAGGTGAAGCCTGGTGGTTTTCCTCTCGTTCTGCTACCTGGCGATCAAAAGTCGCACGTTATTTTTGACAATGTGGTGTTTGACTACATGCCAGGACAGAATATTTTGAATGGATTGACTTTTACTGTTGCAGCAGGAAAGAAGATTGCCATTGTAGGAGGCAGTGGATCGGGCAAATCCACCATCGTTCGTTTGCTGTACCGATTTTACGATCCCAAAGATGGACGCATTATTGTGGCAGGCCATGATATTCAAGATCTCACGATTGATTCTTTACGTAAAGCTATAGGCGTTGTACCTCAGGACACGGTGCTATTTCACAATGATGTATTCTACAACATAAATTACGGCCGCATTGAAGCGACCCCCGATGAAGTTTACGAAGCAGCCAAGATGGCGGAGATTCATGACGCAGTAATGCGCATGCCCAAAGGATACCAAACACAGGTTGGGGAGCGAGGTTTGAAGCTGTCTGGCGGTGAAAAACAAAGGATAGCTATTGCTAGGGCTATCTTGAAAAACCCGCCCATATTAATGTACGATGAAGCCACTTCATCACTGGATTCTATCACTGAAATGAACATCCTCAACAGCCTCAGGCGAGTCACGAAAGACCGAACGTCCATCTTCATCGCTCATCGTTTGTCCACTGTGGTGGACGCTGATGAAATTCTTGTGCTGGAAGATGGACGCGTGCGCGAGAAAGGTTCTCATTATTCACTTATCACGGACTCAAACAGTTTATACGCTCACTTGTGGCACAAACAACACGAGGCGCACAAGCGAGAACTGCACAGAACTCATGTTGACGATGGTACATCGGCTGCTGGGGTGTAA

Transcript

OS493_009790-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75027	Iron-sulfur clusters transporter ABCB7, mitochondrial OS=Homo sapiens OX=9606 GN=ABCB7 PE=1 SV=2
Q61102	Iron-sulfur clusters transporter ABCB7, mitochondrial OS=Mus musculus OX=10090 GN=Abcb7 PE=1 SV=3
Q704E8	Iron-sulfur clusters transporter ABCB7, mitochondrial OS=Rattus norvegicus OX=10116 GN=Abcb7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001447 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221 all species →	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006879 all species →	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05662	ABCB7, ATM; ATP-binding cassette, subfamily B (MDR/TAP), member 7	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009790-T1 global co-expression network