Gene detail

Detailed information of OS493_009841-T1 in Lophelia pertusa

Genomic Location: scaffold_23:3241593...3253351
NR annotation: KAJ7363678.1, Cation-independent mannose-6-phosphate receptor [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_009841-T1

ATGGGTGATAGCGGTCCAGTACTGACAGCGCAACACGACTGTGCATATGAAGTCCTCTGGAAAACAGAGTTTGCATGTCCACAGGATTCCATCATGTCTTCCAATAGCTGCGTGCTAATCAATAAATTTGTCAACTTCGACTTGACAAAGCTCACTGCTGCCAAACTCTCCAACTACGAAGTTTATCATGATGTTGTAGAGAAAGGCAAAACGACTCAATATGTTTATTACATCAATGTTTGTCAATCTCTTGGTTTTCTTTGTAAAGGCATCGACTCTACAGTCTGCCAGGAAGTAAAAGATGAAGCACGAAGAAAATCACTGGGAGATATTTCAAAACAAAAATTGCGATATGCAGATGGCCAGCTAACATTAACGTATGAGCATGGCTCACCATGCAGCAATGGGCTGAATAGAACAACTATTTTCATGTTTATATGTGACTATCATGCCGGTAAAGGGCATCCCGTTTTCAACAGTGAGAGCTACTGTTTTTATTATTTTGATTGGAGAACAAAATATGCTTGTCCACCCAGTCGCCGCACTGGGACACGCTGTCGGGTAGAGAGTCCATCTGGTGTGCGTTACGATCTCTCAGAACTTGTACACATGGAGAATAGTACTTCCAACTGGATTGCTCTGGATGGGGAGAGCAGTAGCTCTAATAAGCAGATTTACATCAATGTTTGTGGTCAGGTTACTTTTCGTAAAGAAACACAACAATGTGACAGGGCTGCTGCCATCTGTATGATCGACAAGAGTACAGGAAAGGTGGTAAGTCTTGGCCGTTATACGGATCCGCCGACCCTGAATCAAGACAATTCGATCAAACTGGTTTATACCCAGGGCAGTGAATGCAAGAAGGATAATTTAGGGAAAAGTATTACGAGAAACTCTACAATTACATTTGTTTGTCAGCCTGGGGATTTGGAAAGTCCTCCTGTTCTGGTGACCCACACACAAGATAACTGCGATTATCAATTCATGTGGAAGTCAGCTGCTGCGTGTTCTCTGGGTGTGAATACTGGGAGAGATTGCAAGGTGGAAGATAAAGAAGCTGGTTATGTGTTTGACTTAACTCCTTTGGCTACAAAAACCTGGGTCAATGATGATTTCTACACCGTGAAAAGTACATCTCAATACAATTTTCAATTGAAGGTATGTGGAGGTAGCAACCACACAGGCTGCCGTGGTTTCAATGTTGGTTCATGCCAAGTTAAAAAGCTAAACCCCAGCCAAAACTGGACACTTGGCCAACCAAACAGTATGTTGTATTACTACGATGGAATGTTAAATCTGACCTACGTCAATGGAACAAAATGTCACAATGGCATCTATCGCACCACGCACATTACATTCCTCTGTAATGCCACAGCAGCTGACAATGGAATAGGAGAGCCAGAGTATGAAAAGGAGAACCACTGTGTTTACAACTTTAGGTGGTACACAAAATATGCCTGCCCTGCAAAGATCACGGAATGTGTCGCTAGGTCAGAGTCTGATCAGTATGACTTGACAAGTTTGGTGAGAACAAAAGACAACTGGCAAGCTAAAGGTGTCCATGGAATGTATTACATCAATGTTTGTCGCTCATTGAATCTTGCACCTTTAGTATCAGGCTGTAGTGGAACAGCTGCTGTCTGCTTGAAGAAGGATGATGGCAGCTCTATTAACTTAGGTGGTGTAACAGATGCACCAATTGTGGAGGGCAACAACATTGTCATAACATACAAAAATGGAGACAAATGTCCCAATACAGACAAGCTCTACAAGACAAAAATAACATTCATCTGTAAGACAGGATTAACGAGCTCTTCTCCTATATTTGTTGAAACTGAAGGCTGCACATACAAGTTTCAGTGGCAAACAGCAGCTGCTTGTAGGATTAAAAATGTTGTGGGTTTGAATTGTGCTGTAAGGGATTCAAAATCTGACACAACATTTAACCTACTTCCCCTGCTGAAGAAGGCGAAAGATCCTGTGTACAGTGGCAATTTAACTGACAACGAAGAACAAGGAAAGTTTGAGCTCAATATATGTGGAACAGTTGCATGTGGACAAGGGAAGGATGACATTGGAGCCTGTCTGACTAAGGGTGATGGAAAAAAGATTGTTCTTGGAAAGACAAGCAAGAGGCTGGAATACAAGGGTGAAATTGTCACTCTTGTATACAGTGAAGGAGACAATTTTGGAGACACTGGACAACAAAGAGAGGTTCAAATCACGTTCTACTGCAACCCAAAGAAGCCATTTGGAAATCCAACCTTCACTGGCCAAGAGGGAAATAAGTACTTCTTTGACGTTCAAACTTCACTGGTTTGCTCTGCATCGGCTGTTCAGTGTTTGGTGACAGGGAAAGGCGATTCTACATACGACTTAACTCCCTTGGGACTTACTGATGGTAACTGGGAAGCAGTTGATACCAGAACTCAGAACAAACATCTTCATTACTTCATCAACATTTGTCGCTCCGTGAATCCAAGCAGAGAAGTTATGAAATGTCCAGGGGGAGCCATTGGTGCTTGTCAGATTGACCACAGTTCTGAGAAGGGATTCAACCTGGGCTATGTGCAAAGTAATCCACAGATAGCAGACAATGGAGAACTGACATTGCAGTATTCTGGAGGGAGTGAATGTCACCATCAGTTCAACAGGAGCATTAGAATCGTTTTCTCATGCTCAAAGCAAATGAGTTCTCCTATCTTCTTGGCTGAATCTCCAGAGTGCGAGTACCTGTTCTCATGGCAGACGCCCAGCGCTTGTGCACTGACAAGAGAGTACGGTACCAACTGCACAGTTGAGGACAGGCAATATGGCTACATGTTTAACTTGTCACAGCTGTATAACAAAACCAAAGATTATGATGTTAGTGTCAGTGGAGCCCCCGGTGTAAGGATCATTTTAAATGTCTGCAACAAGCTCGTGAGCAGCCCAAAGGGATGCACTGGAAATAATGTGGGCGCATGCATTAAAGAAAGTGCAAAGTATATACCCGTTGAACCAAGTAACAGGCTCACATACTACAATGGCCAGATTAACATGACGTATGGGAAATCTCCAGCTGTAAATTTTATCTTTGAATGCAACCAGGAATTAAGCGGTCTCGATACAGGTCCAGCTTGTGAGAAGAAGACTGACAAGTTGTATGAATGCCATTGGCAGACGGCATATGCTTGTAGGCCATTGATCAATGTACAGTGTAGTATTCGGAATGAGGATGGCAGCGTTTGA

Transcript

OS493_009841-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07113	Cation-independent mannose-6-phosphate receptor OS=Mus musculus OX=10090 GN=Igf2r PE=1 SV=1
P08169	Cation-independent mannose-6-phosphate receptor OS=Bos taurus OX=9913 GN=IGF2R PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002799 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00878 all species →	CIMR	Cation-independent mannose-6-phosphate receptor repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR000479 all species →	Repeat	Cation-independent mannose-6-phosphate receptor repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15071 all species →	MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005537 all species →	Molecular Function	D-mannose binding	Interproscan
GO:0007041 all species →	Biological Process	lysosomal transport	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06564	IGF2R, CD222; insulin-like growth factor 2 receptor	-	Lectins	ko04091	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009841-T1 global co-expression network