Gene detail

Detailed information of OS493_009931-T1 in Lophelia pertusa

Genomic Location: scaffold_24:873624...878073
NR annotation: KAJ7337079.1, hypothetical protein OS493_009931 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EA10	GPI alpha-1,4-mannosyltransferase I, catalytic subunit OS=Bos taurus OX=9913 GN=PIGM PE=2 SV=1
Q4R4E1	GPI alpha-1,4-mannosyltransferase I, catalytic subunit OS=Macaca fascicularis OX=9541 GN=PIGM PE=2 SV=1
Q9H3S5	GPI alpha-1,4-mannosyltransferase I, catalytic subunit OS=Homo sapiens OX=9606 GN=PIGM PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002215 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05007 all species →	Mannosyl_trans	Mannosyltransferase (PIG-M)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007704 all species →	Family	GPI mannosyltransferase 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12886 all species →	PIG-M MANNOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004376 all species →	Molecular Function	glycolipid mannosyltransferase activity	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0051751 all species →	Molecular Function	alpha-1,4-mannosyltransferase activity	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:1990529 all species →	Cellular Component	glycosylphosphatidylinositol-mannosyltransferase I complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05284	PIGM; GPI mannosyltransferase 1 subunit M	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009931-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

6.2Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.86	3.76
polyp at pH7 6	18	18	2.89	6.17
coral polyp · control treatment	16	16	2.23	4.45
coral polyp · oil and dispersant treatment	16	16	1.31	2.51
coral polyp · oil treatment	16	16	2.42	3.85
coral polyp · dispersant treatment	16	16	1.28	3.55
Polyp	10	9	3.72	5.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.