Gene detail

Detailed information of OS493_009960-T1 in Lophelia pertusa

Genomic Location: scaffold_24:1097728...1138996
NR annotation: KAJ7337108.1, E1 ubiquitin-activating protein uba2 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28GH3	SUMO-activating enzyme subunit 2 OS=Xenopus tropicalis OX=8364 GN=uba2 PE=2 SV=1
Q9Z1F9	SUMO-activating enzyme subunit 2 OS=Mus musculus OX=10090 GN=Uba2 PE=1 SV=1
Q642Q1	SUMO-activating enzyme subunit 2-A OS=Xenopus laevis OX=8355 GN=uba2-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005281 (this species only)
Ubiquitin family	E1\|ThiF\|ThiF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10585 all species →	UBA_E1_SCCH	Ubiquitin-activating enzyme, SCCH domain	Domain	Interproscan
PF14732 all species →	UAE_UbL	Ubiquitin/SUMO-activating enzyme ubiquitin-like domain	Domain	Interproscan
PF00899 all species →	ThiF	ThiF family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033127 all species →	Active_site	Ubiquitin-activating enzyme E1, Cys active site	Interproscan
IPR019572 all species →	Domain	Ubiquitin-activating enzyme, SCCH domain	Interproscan
IPR023318 all species →	Homologous_superfamily	Ubiquitin activating enzyme, alpha domain superfamily	Interproscan
IPR028077 all species →	Domain	Ubiquitin/SUMO-activating enzyme ubiquitin-like domain	Interproscan
IPR035985 all species →	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR000594 all species →	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR030661 all species →	Family	SUMO-activating enzyme subunit Uba2	Interproscan
IPR045886 all species →	Family	ThiF/MoeB/HesA family	Interproscan
IPR042449 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953 all species →	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008641 all species →	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0019948 all species →	Molecular Function	SUMO activating enzyme activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031510 all species →	Cellular Component	SUMO activating enzyme complex	Interproscan
GO:0032446 all species →	Biological Process	protein modification by small protein conjugation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10685	UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B	EC:6.2.1.45	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009960-T1 global co-expression network