Gene detail

Detailed information of OS493_009968-T1 in Lophelia pertusa

Genomic Location: scaffold_24:1256518...1265274
NR annotation: KAJ7337116.1, hypothetical protein OS493_009968 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NBX0	Saccharopine dehydrogenase-like oxidoreductase OS=Homo sapiens OX=9606 GN=SCCPDH PE=1 SV=1
Q5R5C9	Saccharopine dehydrogenase-like oxidoreductase OS=Pongo abelii OX=9601 GN=SCCPDH PE=2 SV=1
Q6AY30	Saccharopine dehydrogenase-like oxidoreductase OS=Rattus norvegicus OX=10116 GN=Sccpdh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006317 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03435 all species →	Sacchrp_dh_NADP	Saccharopine dehydrogenase NADP binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051276 all species →	Family	Saccharopine dehydrogenase-like oxidoreductase	Interproscan
IPR005097 all species →	Domain	Saccharopine dehydrogenase, NADP binding domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12286 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005811 all species →	Cellular Component	lipid droplet	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009247 all species →	Biological Process	glycolipid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009968-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009968-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

156.3Max TPM

62.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	68.07	95.99
polyp at pH7 6	18	18	64.43	98.10
coral polyp · control treatment	16	16	70.12	124.75
coral polyp · oil and dispersant treatment	16	16	56.38	127.40
coral polyp · oil treatment	16	16	73.99	156.31
coral polyp · dispersant treatment	16	16	53.34	119.94
Polyp	10	10	43.40	77.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.62
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.08
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.65
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.09
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	156.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.13
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	119.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.80
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	77.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	74.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	61.86
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	48.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	41.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	37.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	28.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.35

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.