Gene detail

Detailed information of OS493_010007-T1 in Lophelia pertusa

Genomic Location: scaffold_24:1809457...1810242
NR annotation: KAJ7337153.1, Inter-alpha-trypsin inhibitor heavy chain [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T052	Inter-alpha-trypsin inhibitor heavy chain H4 OS=Bos taurus OX=9913 GN=ITIH4 PE=1 SV=1
Q14624	Inter-alpha-trypsin inhibitor heavy chain H4 OS=Homo sapiens OX=9606 GN=ITIH4 PE=1 SV=4
P79263	Inter-alpha-trypsin inhibitor heavy chain H4 OS=Sus scrofa OX=9823 GN=ITIH4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009651 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13768 all species →	VWA_3	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR050934 all species →	Family	Inter-alpha-trypsin inhibitor heavy chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10338 all species →	INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_010007-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010007-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010007-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

93.5Max TPM

28.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.13	26.79
polyp at pH7 6	18	18	17.87	31.09
coral polyp · control treatment	16	16	38.89	82.77
coral polyp · oil and dispersant treatment	16	16	35.73	79.03
coral polyp · oil treatment	16	16	29.17	52.86
coral polyp · dispersant treatment	16	16	42.59	93.52
Polyp	10	10	10.28	15.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.76
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.60
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.89
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.99
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.40
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.63
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.93
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	93.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.49
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.53
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.