Detailed information of OS493_010020-T1 in Lophelia pertusa

Genomic Location: scaffold_24:1888177...1894021
NR annotation: KAJ7337166.1, negative regulation of tumor necrosis factor (ligand) super member 11 production [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9R0R1Melanotransferrin OS=Mus musculus OX=10090 GN=Meltf PE=2 SV=1
O93429Serotransferrin OS=Paralichthys olivaceus OX=8255 GN=tf PE=2 SV=1
P08582Melanotransferrin OS=Homo sapiens OX=9606 GN=MELTF PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000902 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00001
all species →		7tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF00405
all species →		TransferrinTransferrinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000276
all species →		FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR018195
all species →		Binding_siteTransferrin family, iron binding siteInterproscan
IPR001156
all species →		DomainTransferrin-like domainInterproscan
IPR017452
all species →		DomainGPCR, rhodopsin-like, 7TMInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11485
all species →		TRANSFERRINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004930
all species →		Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186
all species →		Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0005769
all species →		Cellular Componentearly endosomeInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006826
all species →		Biological Processiron ion transportInterproscan
GO:0055037
all species →		Cellular Componentrecycling endosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_010020-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_010020-T1 global co-expression network
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