Gene detail

Detailed information of OS493_010036-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2055353...2080449
NR annotation: KAJ7337180.1, hypothetical protein OS493_010036 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_010036-T1

ATGGACGAAGACGATAGGAGGAATTGTCTTGATGTTTACTATCATCGAGTAAAGAAACAGATTCTTCAGTATCAAAGTGGAAGTATTGGATTGTTTCCTCTGCACACAGCTAATGTAAACAATGAAGAGAGTCATGTTAGAGACAACATTTACTGTGCCATGGGCGTTTGGGCTCTGGCACTGGCTTACAGACACATGGATGACAGCAAAGGCCGAGCATATGAACTTCAGCAGTCTGTTGTGAAATGTATGAGAGGAATCTTGTTCTGTTACATGAGGCAGGCTGATAAGGTGGAGCAATTCAAGAAGAATCAATCAGCGTATCATTCCCTTCATGTCAAGTTTAATGTCAACACTGGAGACACAATTGCTTCAGAATTAGAATGGGCTCATCTTCAGATTGATGCGGTATCACTTTATCTTCTTACCCTTGTCCAAATGACTGCATCAGGACTACAGATTATTTATACCAATGACGAGGTTAACTTTGTTCAGAATCTGGTGTACTACATTGAGCGTGCTTACAGAACTCCCGATTACGGCACGTGGGAAAGAGGAAGTAAAGAAAATGTAGGACACAAGGAGCTGAATGCCAGTTCTATTGGTATGGCCAAGGCTGCCCTTGAGGCTATCAATGGATTTAATGTTTATGGAATGCAGGGGACCTCATCATCAGTAATCTATGTGGATCCTGATGCTCACAACAGAAACTACACCATCATGCATTCTATGCTGCCAGTGGCATCATCATCAAAGGTGACAGATGCATCGCTATTGATGATCACTGGATTTCCTGCTTTTGCTGTTGGTGATGAATCTTTGTGCCAGCAAGCAAAAGACATGGCTGTGGAGAAATTGGAGGGAAGCTACGGATTAAAACGGTTCATGCGAGATGGTTACAAGACTGTTGTGGAAGACAAAAATCGCAGATATTATGAGAAGAGAGAACTACAGATATTTGATAGGATTGAAAGTGAATGGCCAATCTTTTTCATCTATCTGGCTCTAGATGCTCTCTTCAAGAATGACAAAGAAACTGCACAAAAGTATATCAGGAAACTGCAAGAAGACTTGCTTTTGAACAATGAATCTGGAGACTTGATTCCACATTATTACTATGTGCCAAAAATATATCTGGAAGCAGAACGGAAAAAGCCACATTCTCAAGTTCGGTTGCCAAGCGACGAAGATGGCGACCTTTTCCTTTGGGGACAGTCACTCTTGATTATAATGAATCTGATAGATGACGGTCTTTTAGATGTGAATGAAATTGATCCTATTGGAAGGCACCTGTCCCACTCAGCTAAAAATCGCTATGGTCACAGCAGCTACAGATATTCATCATTTAGGGTTGTCGACTCTGACTTGGTTGTGCAAGTGTCTTTGATCACGGAAAGCAGAAACTTACAGACAACCTTGGCGACATTTGGTATTGAGACGCAAACTCCGCAACAAATTGAACCCATACAGATCTGGCCTCCGTCAGAACTAGTCAAGGCTTACAAGCGCCTTGGTGTCAATCGTAAACTCGGGTTGTCTGGTCGTCCACTGAGGCCAATAGGAAGTCTGGGAACTAGTAAGATCTACCGTATCTTGGGCAGAACAGTTGTAACTTATCCTAAACTTCTGGATGAGACTGATTTCTACATGGCTCTTGACATGTCTCTTCTTATCGATGAAATAAAGACCAATTTGGCGTTTGTGCGAAACAATTGGAACATGAAGGGACGACCCACGTTGTGCCTGTTATTGAGAGAAAAGAACTTGCGAGGAAAGCAATTTCAGGAGACACTTGAATTGTTAGCCTCATTCAAAAGAGGATTTTGTGGAGGAGTGAAGATAAAGCTAGGGAGACTTCAGACTTTGGTATCAACGGCAGTTATCGATCACCTGGACTTCCTACAAGCCGACCGTGGTGTCAGTGACCTTGATGAAACCGAGGGTGGTCTAGACGAAGGACGTGTCAAAGAAAAGGAAGGCACAGATTCCAATCCCCCTACGCCTGGCTCATCCGAGGGGCATACGATGACTCGCCACATCCGTGCCATGACAGTGACTGCTGAAGATGAAGTACTTCCAACAGATGAGGAGGATGGAAATGGCAGAGACCTGGTGACCAAATCACGTGAAGGGCTCCTGGCGGAGTTGCAGAACAAGCCAAACGTCGACCGACAAATGTTGGTTTTACAGGAGCTAATGAAGCGAGAGGGCGAAGATTTCCAAACACCCGAGGGCACGGTAAAGGATGTGGTCGATTCTCTTTACCAGAAGGCTGCATATGACAGGAAGTGGTCAGCGGTACGACGGGGAGCCGGGCTGCTCAAAAAACTGGTGGATAGTCTTGCGCCTGGGATCACTACTATACTGGTCAGCGGTAAAGTGGTAACAATTGGTGTGTTTGGGCATGAAGAGAAAGTGATATATGAACCTTTGACACCTGCAGCTATCCAGAAAAATCCTTTACTCATCTGCAGTCCTCATGATGTCAGAGAAGCAGTACTTCAACAAGAGGTCCAGTGA

Transcript

OS493_010036-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TSH2	Phosphorylase b kinase regulatory subunit beta OS=Mus musculus OX=10090 GN=Phkb PE=1 SV=1
Q93100	Phosphorylase b kinase regulatory subunit beta OS=Homo sapiens OX=9606 GN=PHKB PE=1 SV=3
P12798	Phosphorylase b kinase regulatory subunit beta OS=Oryctolagus cuniculus OX=9986 GN=PHKB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001098 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00723 all species →	Glyco_hydro_15	Glycosyl hydrolases family 15	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR011613 all species →	Domain	GH15-like domain	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR008734 all species →	Family	Phosphorylase kinase alpha/beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10749 all species →	PHOSPHORYLASE B KINASE REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005964 all species →	Cellular Component	phosphorylase kinase complex	Interproscan
GO:0005977 all species →	Biological Process	glycogen metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010036-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_010036-T1 global co-expression network