Gene detail

Detailed information of OS493_010037-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2080588...2090585
NR annotation: KAJ7337181.1, hypothetical protein OS493_010037 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TSH2	Phosphorylase b kinase regulatory subunit beta OS=Mus musculus OX=10090 GN=Phkb PE=1 SV=1
P12798	Phosphorylase b kinase regulatory subunit beta OS=Oryctolagus cuniculus OX=9986 GN=PHKB PE=1 SV=3
Q93100	Phosphorylase b kinase regulatory subunit beta OS=Homo sapiens OX=9606 GN=PHKB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001098 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19292 all species →	KPBB_C	Phosphorylase b kinase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045583 all species →	Domain	Phosphorylase b kinase regulatory subunit alpha/beta, C-terminal domain	Interproscan
IPR008734 all species →	Family	Phosphorylase kinase alpha/beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10749 all species →	PHOSPHORYLASE B KINASE REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005964 all species →	Cellular Component	phosphorylase kinase complex	Interproscan
GO:0005977 all species →	Biological Process	glycogen metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010037-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010037-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

47.3Max TPM

21.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.37	47.26
polyp at pH7 6	18	18	28.43	46.07
coral polyp · control treatment	16	16	21.43	31.21
coral polyp · oil and dispersant treatment	16	16	16.04	31.29
coral polyp · oil treatment	16	16	20.76	30.78
coral polyp · dispersant treatment	16	16	16.10	30.49
Polyp	10	10	23.21	38.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.41
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.49
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	38.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	35.79
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	33.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	27.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.