Gene detail

Detailed information of OS493_010043-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2183645...2189287
NR annotation: KAJ7337187.1, ndufv2NADH dehydrogenase flavoprotein subunit 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0MQI8	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Gorilla gorilla gorilla OX=9595 GN=NDUFV2 PE=2 SV=1
P19404	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens OX=9606 GN=NDUFV2 PE=1 SV=2
Q0MQI9	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pan troglodytes OX=9598 GN=NDUFV2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01257 all species →	2Fe-2S_thioredx	Thioredoxin-like [2Fe-2S] ferredoxin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002023 all species →	Family	NADH-quinone oxidoreductase subunit E-like	Interproscan
IPR042128 all species →	Domain	NuoE domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10371 all species →	NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003954 all species →	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0045272 all species →	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03943	NDUFV2; NADH dehydrogenase (ubiquinone) flavoprotein 2	EC:7.1.1.2	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010043-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

239.3Max TPM

42.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.04	68.74
polyp at pH7 6	18	18	48.27	68.48
coral polyp · control treatment	16	16	44.74	212.58
coral polyp · oil and dispersant treatment	16	16	40.89	239.29
coral polyp · oil treatment	16	16	37.26	55.07
coral polyp · dispersant treatment	16	16	21.25	32.24
Polyp	10	10	62.59	99.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.75
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.13
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.42
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	212.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.03
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.37
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.39
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	239.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.52
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	99.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	77.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	76.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	63.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	54.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	54.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	52.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	50.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	49.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	48.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.