Gene detail

Detailed information of OS493_010048-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2227308...2229942
NR annotation: KAJ7337192.1, Dual specificity protein phosphatase 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51452	Dual specificity protein phosphatase 3 OS=Homo sapiens OX=9606 GN=DUSP3 PE=1 SV=1
Q5RD73	Dual specificity protein phosphatase 3 OS=Pongo abelii OX=9601 GN=DUSP3 PE=2 SV=1
Q9D7X3	Dual specificity protein phosphatase 3 OS=Mus musculus OX=10090 GN=Dusp3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009816 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020405 all species →	Family	Atypical dual specificity phosphatase, subfamily A	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45682 all species →	AGAP008228-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0008138 all species →	Molecular Function	protein tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0033549 all species →	Molecular Function	MAP kinase phosphatase activity	Interproscan
GO:0043409 all species →	Biological Process	negative regulation of MAPK cascade	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17614	DUSP3, VHR; dual specificity phosphatase 3	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010048-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.4Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.67	13.11
polyp at pH7 6	18	18	9.01	12.62
coral polyp · control treatment	16	16	17.31	31.03
coral polyp · oil and dispersant treatment	16	16	10.72	20.97
coral polyp · oil treatment	16	16	14.54	31.37
coral polyp · dispersant treatment	16	16	8.26	19.80
Polyp	10	10	8.53	15.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.99
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.73
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.