Gene detail

Detailed information of OS493_010065-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2388862...2422904
NR annotation: KAJ7337208.1, hypothetical protein OS493_010065 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_010065-T1

ATGGCAAGGATCAGCATTTTGTGGCTGTTAGGCTTATTTATACAGTTGACTTTCTGCGTTGATGCGAGTGCACAGTTTGAAGATCCTTTGCAGCGACACATCTTTGATAATGATGACAATAAACATGACTTGAATGATGCGGAATTTGAAAAGATTCTCTTACAATACGATAAGAATGAAGATGGAGAGCTATCAGCTGAGGAAATGGAAAAGTATTTTCAGGATGCTATGGCCGCTTTACGAGGTGAAACTGGTGAAGACAAGCCACAAGAAAAACCAGGAAAAGGTTCAGCTAAGAGGACGAGTACAAAGCAGAAACGTCCAACAAGAACACAGCCATCAACTGTCAATACTGGATCCAAGTGGAGTGTAAAACAGATTGTCGGGGGTCTGTTAGGAATACTTTGTTTAATTATAGTGTGTGCGGCAGTAGTTCAGCGGATGACCAAACATGCAGGTGTTGATGTCGAGGATGTCCGTGCCGCACGTTTAAGAAGGCTGGCCACTGAACAACCCAAGACTAATGCAGAAAATTCAACACTTAAGTCACGTAGAAATGAAGTTTCTCCAGCAGTGAACAGGCCAGCAGTCATTTCCAGTGATAAGCCAACCATTAGAAGAAGGTTGAATGACAAAAGTGAGGCATCTAAAGGTAACACAGATGAGGCAGGAGTCTCAGGAACTGGCAAAAGATTAGACAAGTCAAGACTGTTAAATCCAAGTGTTGAGAGGACAGAGGACTGTCAAGTTGAGCCTCAGTTGTTCAATGCAACAGCGAAACCACTTGCTTCCGTTGATCGGGTGGCAGCTGCCTCGGTTAGAGCTACTTCCCCAGAGAGGTGTCCAGTTACAACGGCAGTTGGTGCAAGCGGCATGTCTTGTGATCAAAGAGTGGTAGCAGATAATTTTGGTGTGATAGAGACAGCAGATGTACAGGAAGAAGTTTTGGCATCCTCACCTCGGAAGCTCCCAGCACCCAAGCAAGAAAAGTTACAGGACCTACCATATGAAGATGTGGCGAGGAAGGTGTTGACAAAGGTTTTGGATTGTTCTTTTGAAAATCAAGTTTCCAAGAAGAATGAAGGCCTTCCACTAATCAAGCTTGGAAAAGAAAAAGGGCAAGCAGTTTTACAAATTGAGGCATCTGAAATACCTGTCAATAGTGATGACTTAAGCAAGCTAGAAAAACTTCTTGCTAAAAGGATCTATAAAGAAGTGGATCCAATGAAGTTTGCAATTCTGTGCTTTGATCACTGCTCGCAGCTACCAGGAAAGAACTTTAAAACAATTCATGATGGAGGAAAGATTTGGAAAGAAGTGACATCAGCTGTTATGGAGCTATGTGTGAATACAGTTCTTAAGCATCTTATACATGCTGCGGCAAGTCCTACTGCAGCTGAAGATGACTTGTGGGCAGACTTTGTCCAATCTGGCCAATCTGAAGCGCCATCTCAGTTTTTTCTGGCGAGTGTTGGAGGCTGGTCATGTGATGGTGTGACAGTGAGTGGTGATCTTCTTAGCAGACTGCTGGAGAAAGGCAAACATGATTCAGAAGTAAAAGACACTTTTGTTGAAATGATAACTGTTGGAGGAAGACAAGTCGTCCAAGTTAAGAGGATAAATGAGATAACTCTAGAGTGCAAGAGTATTTTCACAGGGCTGGAAACCCTTCTCTCTCAGCCTGCCATGGCTGAATTTCTTGCTGAAGCCCTTGAACGAGAATTGGACAGTGGAATAAAAGAACTGGGCATTTTCTTTCAAGAGAGGTCACTGTTCTCTTCATTCCTGGCGACATCTACGATAGATATAAAAATAGACATGAAGTCACGTGCTGCTTCTTGTTTCCTTGAGCTGCCTCACTTTCCTCAAGCATTTCGAAGTGACGTTGATCAACTTCAGTCTCAAATTATGGATGGCATCCATTCCTGTCAAAATGTCGTTTACAAGGCACTGGTGAAGTTGTTCAAATCCAATGCCAAGGACAGTGCGCTAGCATGGCTGGCCGGTGTTGTTTCACTCAATGATCTCAGGGTGTCAGCAAATTTACCCAGAGATAATTTTAAAACAACAGTGGCTGGTGATGGTTTTATGGTAAATCTGTGCTCAGTAGCTCTACAGCTTTGTGATTCATTTCTGCTGTCAAAAGGCAAAGGAAAATACAAACAGATAGAGGCGCGATACTGCACCACTAAAGGCTGTCGCTTGAGATTCGATAATGAACGGACGCTGGCTGGCGGACACATTGGTACAGAGAACGAGGAGAAAATCGATCTACGTAGTTTGCTGTTCTCTTCAGCAGAACTGAAAGGTCAGTTTAAGCTGATGACGGAGATGTTCCATATTACACACAGCGCTCTTCACATTGGACTCACCATCACCCTGCAACATTACAACAAACTCTTAAGTAATTTCTTCTTGATGGTTGAAATGAAGGAAGGTACTCCTGTAGAAGCGAACATAAGAAAACAGCTTATGCTGTTTGTACATCAGTGGGATACTTGTCTGCAGGACACACACTTTATGAGGCTGTGTTCAGAGTTTTACATCACAACCGCTGCTTGGCTTCTTCATCTTCTAGAAAGTTGTTCCTCGGAAAATCAGGGTTTGTCTGAAAATGAAATCCAAGTGAAACAACGCGAAATACTCGCGAATATTCCCGAGTTCTACGTGAAAGACATGTGTTCTTGGTTCAGATTTGCCGCTCTACACAAGCCTTGTGCACTCAAAGGATTGGACATCTGTGTGTTTGTTGATTGCTGTTGTGCTCTTATTGAGCGGCGAGACCTGATGCCTGGACCTGTGGCGTCCACGAGAATTGTTACAGCACTGTTATCATTTGCTGAAATATGCTCCAGAAATAAAAGGAAAAACAAACTGTTGGAGACAACAACGTGGGGAAGTGGCATTGAAGGTGACCTGATGGCCTGCGTTGCTATGTGTCCAGCGGTCAGAGAAAAACTCGGCCCAGCTCTAATTCATACGTACTCCTCGGTCGACGTTGTGGAGGGCCTGGACGTGGACAAAGAAGAGTTTGACAAATTTTCAGCCAGGTTTGAGATTGTTAAGTTGTTGGAAACCCTGTGGAACAGACCGGACTGCTTGCCTTCAATTTTGGAAGAGTGTGGAAGGGAGAGTTTTCAGGCATTCCTTGGCTCTGTACTAGACACGCTTCTTTACGTGTTAAAAGATGGTTTAATAAAAATTACACATGTGAGGAAATTACAGTGTGCCAAGCAATGTGATGAAAAGTGGAAAGAACTGAGCGCAGAACAGCGTCAAGAAAAGGAACAGTTTTTGAAGGGTGAAGAACATACGTCGAAATCCTTTATGGCGATGGCTAACTCAACGCTGGCATTTCTGGTGAAAATCACAGAAGAAGATAAAGTGGCCCGCTGTTTCTCGCGTTCTCCACTGTCACTCAGAGCATGTGCAGCGATAATCGGATTTTTGGATTCATTATGCGGCCGCAAATCCCTGGATTTGAAAGTCCAAAACATGGAGAAGTATTCATTTGATCCACGTGACCTGCTGGTTAAAATTCTAACAGTGTTAGTACGCATGTCAAATGCCAGCGAAGAGGGAGAGTTTGTTAAATGCCTCGCCGCTAACCCAGACTACAGCAGGCTCAGCGTGGAGCGAGCGTTGCATGTTGTTCAGCGAGAGAATCTCGCTCCAGATCACGTGGTTCAAGACTTGAGAAGAATTATGCAAGAGGTTGGCTCATTGTTAGCACGAGAAGAAGGCCACGCCTCCTCGGTTGAGGACGAATTAAACGAGGATGATACTGAACCTGCCCCGCCAGAGGTGATGCCTGTGGATGCAGATCAAGCTTATATTGACGCTCTTGAACTGATCAAGTTTGAAACCGCCGAACTGGTGGAATGTCACGCCTTTCGTAGCTTTGCCAGCAAACCTATCTGTCCCAGATCTGGTAAAGTGCGTGCTCTTATGCGAGAGGCAACTCAACTGAAAAATAACCTTCCGATTCATCCAAATGCTTCCATCCTTGTCAAACAGTCGGGCTGCTTCGTGTTTGATATCTACTTTCCGTCCTCGTATCCCGTTGATCCACCGCTGGTGAAAATTATCACCACTGGTAACGGCACTGTGAGGTTCAACCCGAATCTTTATGCAGACGGAAAGGTTTGTTTGAGTTTGTTGGGGACGTGGCACGGTGGAGATGCAAGTGAGAAATGGGATCCGAAGAAGTCTTCGCTTTACCAGGTTTTGGTGTCTATTCAAAGCATGATGTTTTCTCCTGAGCCTTATTTTAACGAGCCTGGTTATGAAGGCATCAGAGGAACCGACGACGGAGATGCTCTGTGCAATGAGTACAATGCAACAATCAAGCTGCAAACGATACGTCACGCCATGGTCGGACAGTTACGCGAACCAACACCGGGATTTGAAGAAGCTATCCGTGCTCACTTCCGTTTCCAAAGAGAGGCTGTATTGAAGCAGTGCGCTGAGTGGCTCACACAGTGCGCAGACGCTGAAGAAGAAAGACGCATGCGCAAATCCGTCGAGACATTGAAAAGTGAACTTGAAAAGTTGTAG

Transcript

OS493_010065-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NR09	Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=3
O88738	Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Mus musculus OX=10090 GN=Birc6 PE=1 SV=2
Q5UQ88	Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R521 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009035 (this species only)
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF10408 all species →	Ufd2P_core	Ubiquitin elongating factor core	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR045132 all species →	Family	Ubiquitin conjugation factor E4	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR019474 all species →	Domain	Ubiquitin conjugation factor E4, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13931 all species →	UBIQUITINATION FACTOR E4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010065-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_010065-T1 global co-expression network