Gene detail

Detailed information of OS493_010079-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2524707...2526080
NR annotation: KAJ7337222.1, hypothetical protein OS493_010079 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003441 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_010079-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR039181 all species →	Family	EIG121-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22727 all species →	PROTEIN CBG13728	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010079-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010079-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

117.6Max TPM

42.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	28.93	48.31
polyp at pH7 6	18	18	27.23	40.28
coral polyp · control treatment	16	16	52.74	95.06
coral polyp · oil and dispersant treatment	16	16	73.06	117.56
coral polyp · oil treatment	16	16	55.15	103.26
coral polyp · dispersant treatment	16	16	38.89	80.53
Polyp	10	10	18.32	29.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.57
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.77
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.67
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.46
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.10
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.77
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.35
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	29.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.89
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.