Gene detail

Detailed information of OS493_010081-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2529183...2536665
NR annotation: KAJ7337224.1, hypothetical protein OS493_010081 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003441 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_010081-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR039181 all species →	Family	EIG121-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22727 all species →	PROTEIN CBG13728	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010081-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010081-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

57.7Max TPM

18.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.91	23.91
polyp at pH7 6	18	18	9.94	15.80
coral polyp · control treatment	16	16	21.47	42.08
coral polyp · oil and dispersant treatment	16	16	33.20	57.68
coral polyp · oil treatment	16	16	21.82	45.95
coral polyp · dispersant treatment	16	16	21.32	47.91
Polyp	10	9	4.22	8.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.91
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.99
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.99
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.69
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.82
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.57
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.