Detailed information of OS493_010096-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2812986...2814179
NR annotation: KAJ7337239.1, Retinoid isomerohydrolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99NF1Carotenoid-cleaving dioxygenase, mitochondrial OS=Mus musculus OX=10090 GN=Bco2 PE=1 SV=1
Q6QT07Carotenoid-cleaving dioxygenase, mitochondrial OS=Mustela putorius furo OX=9669 GN=BCO2 PE=1 SV=1
Q8HXG8Carotenoid-cleaving dioxygenase, mitochondrial OS=Macaca fascicularis OX=9541 GN=BCO2 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001128 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03055
all species →		RPE65Retinal pigment epithelial membrane proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004294
all species →		FamilyCarotenoid oxygenaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10543
all species →		BETA-CAROTENE DIOXYGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016702
all species →		Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenInterproscan
GO:0003834
all species →		Molecular Functionbeta-carotene 15,15'-dioxygenase activityInterproscan
GO:0004744
all species →		Molecular Functionobsolete retinal isomerase activityInterproscan
GO:0010436
all species →		Molecular Functioncarotenoid dioxygenase activityInterproscan
GO:0016121
all species →		Biological Processcarotene catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_010096-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_010096-T1 global co-expression network
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