Gene detail

Detailed information of OS493_010191-T1 in Lophelia pertusa

Genomic Location: scaffold_24:3657781...3658692
NR annotation: KAJ7337329.1, hypothetical protein OS493_010191 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0UY98	Transmembrane protein 163a OS=Danio rerio OX=7955 GN=tmem163a PE=2 SV=1
F2Z4R5	Transmembrane protein 163b OS=Danio rerio OX=7955 GN=tmem163b PE=2 SV=1
Q8C996	Transmembrane protein 163 OS=Mus musculus OX=10090 GN=Tmem163 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012075 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_010191-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan
IPR026765 all species →	Family	Transmembrane protein 163	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31937 all species →	TRANSMEMBRANE PROTEIN 163	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14694	SLC30A11, ZNT11; solute carrier family 30 (zinc transporter), member 11	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010191-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

18.2Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.39	7.73
polyp at pH7 6	18	18	4.62	14.18
coral polyp · control treatment	16	15	2.60	7.15
coral polyp · oil and dispersant treatment	16	15	1.49	4.86
coral polyp · oil treatment	16	16	2.49	8.49
coral polyp · dispersant treatment	16	15	1.45	5.24
Polyp	10	10	7.52	18.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.73
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.04
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.54
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.85

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.