Gene detail

Detailed information of OS493_010222-T1 in Lophelia pertusa

Genomic Location: scaffold_25:156797...158695
NR annotation: KAJ7392575.1, DCN1-like protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZ73	DCN1-like protein 1 OS=Mus musculus OX=10090 GN=Dcun1d1 PE=1 SV=1
Q5ZKU1	DCN1-like protein 1 OS=Gallus gallus OX=9031 GN=DCUN1D1 PE=2 SV=1
Q96GG9	DCN1-like protein 1 OS=Homo sapiens OX=9606 GN=DCUN1D1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007685 (this species only)
Ubiquitin family	E3\|E3 activity\|DCUN1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03556 all species →	Cullin_binding	Cullin binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042460 all species →	Homologous_superfamily	DCN1-like, PONY binding domain	Interproscan
IPR014764 all species →	Family	Defective-in-cullin neddylation protein	Interproscan
IPR005176 all species →	Domain	Potentiating neddylation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12281 all species →	RP42 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032182 all species →	Molecular Function	ubiquitin-like protein binding	Interproscan
GO:0045116 all species →	Biological Process	protein neddylation	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010222-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010222-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

82.4Max TPM

39.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	41.80	81.62
polyp at pH7 6	18	18	43.14	62.41
coral polyp · control treatment	16	16	39.18	67.59
coral polyp · oil and dispersant treatment	16	16	45.64	65.43
coral polyp · oil treatment	16	16	36.85	47.22
coral polyp · dispersant treatment	16	16	26.30	45.27
Polyp	10	10	40.67	82.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.87
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.59
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.96
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	82.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	56.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	43.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	37.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	37.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	36.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	32.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	28.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.