Detailed information of OS493_010233-T1 in Lophelia pertusa

Genomic Location: scaffold_25:235949...241248
NR annotation: KAJ7392584.1, E3 SUMO-protein ligase RanBP2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9ERU9E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2
Q7Z3J3RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens OX=9606 GN=RGPD4 PE=1 SV=3
P49792E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9606 GN=RANBP2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003153 (this species only)
Ubiquitin familyUBD|ZnF|NZF · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00641
all species →		zf-RanBPZn-finger in Ran binding protein and othersDomainInterproscan
PF00638
all species →		Ran_BP1RanBP1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001876
all species →		DomainZinc finger, RanBP2-typeInterproscan
IPR036443
all species →		Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR000156
all species →		DomainRan binding domainInterproscan
IPR045255
all species →		FamilyRan binding protein RanBP1-likeInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23138
all species →		RAN BINDING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046907
all species →		Biological Processintracellular transportInterproscan
GO:0005096
all species →		Molecular FunctionGTPase activator activityInterproscan
GO:0005643
all species →		Cellular Componentnuclear poreInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_010233-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_010233-T1 global co-expression network
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