Gene detail

Detailed information of OS493_010262-T1 in Lophelia pertusa

Genomic Location: scaffold_25:447494...468139
NR annotation: KAJ7392611.1, hypothetical protein OS493_010262 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_010262-T1

ATGGCCAATGGCAAGCTGGCTGGTGACCCACTCTTAACCCAGTATGACTTAAAGGACCAGTCAGATGGCGCACTACCTTTGGTATTACGAAGAACTTACAGTCCACTGCTTTCTAAGCGAAGAGAGAAGGGCGCTTTTGGTGTTGGTTGGATGGCGTCATGGTGGGAGGCTAAAGTAACACAGATTACACCAGAAACGATTAAAATTGTTCGTTTACGCGAAGAGTTAGTGTTTGAGGCAGAATCAGCTGGGCTCTACATGTCATTGGATGGAAAGAAAGTTACTGTTAACAATACAGAGATCCAAAGAGGTAACGAGACGATCACGATCGAATATGCACAAAACCAACCCTCGACTTTCACACATTCGTCCGGAAGAAAAATCTCTGTGAAATACAACGACAATGGATTTGTTCGAGAGACGAGATTTGAAGACGGATCCGGTAAAAAACGAAGATGTTTCTATACATATGATTGGGACACATCTACACTGCTGTCTATCAGCACCGGTGAACAAACTACACGTTATGCGTACAGCTTCCACGGCGACCTAACAAGTATTGTTTACCCCACATCGTCTGCCGTCAAATACGCTTGGAACCAACATGGATTCTTGAGTAATATAACAGGTTTTAACCAGAAAAACAAGTTTATCCAGGGAGTGTATTTCTCGTACGACTGGAATGGTAGGGTTACTATGTCCAGACTTCCACAAGGCGACTCGGCCGTGCTCGTGTTTAACGAAGAAGCGAAGATGATGGATATCATAGGCGGTGGGTTTGGCGATGTACGATTTGAGAGTGTTCAAACTGATGACCAAGTCGTGAGAACCATAAAGCAAGGCGACCAGGTTGTAATGAGCAGAACATTCAATATCAAGACGAACATCATGTCTGTTGTGGACGCTAATGACCACGAAACACAATTCCTATTACGGAAAAACGGAGATGTTCTAAACACGACAGATCCCGGTGGCTTCGTTTATCAGAATATTTACGACAAAAAAGGCAAACTGGTCAAGTTCATATACCCGGATGACAAGACCGAACTTTCTGATTATGATGGCTCCGGAAGACTGGTAAAGTTTACTGGTAGAGCTGGAAAGGAAATCAAGTTCGAGTACAATGAAAATGACAAAATCGTCAAAAAAGATGTTGATAATCTTGGCTCTTCGTATTTCCTTCACGATGACAGCGGAAACATGGTTCAAGCAACAAACGATATCGGAACAATAAACATTGCTTACGACAGAGAAAACAGGCCTACCAGTATCATTTATCCAAACGGTCAGCGGATCACGTACAAATTCAATGATCTCCAGCGTCGTGTGGCACTAAATGAGACAGTCTCTGGGCTAAGCCTGGCTTACACGTATGACAGGCTTTACCGGTTATCTGAGGTCGTACGTGTAAACCCAAGCGGTAGACGTGATATCCTATTAAAGTTAGAGTACAACTCAAAGGGAATGGTGTCTAAACGTGTTCTTGGAAATGGAGCATATTCTGAGTACGTTTTAGATCCAATTAACTTCAAACTGTCACGTATGGTGAATTATTTTCCAAATGGAAGCGTCTCTTCGTATTTTGGATACAATTATGACAGGAAGGGGCGCATCATTCAACTAAATACAACGTCTGGGAACTGGCGGTATAAATTTGATGCAGCTTCGCAGCTCATACAATCAACGGATCCACGAGGCAAAGTTGTTCGTTACACCTACGACAAACGAAAAAACCGAGTTGTCGTCTCAGAAGAGCCTGGTAACAAGACTCTGTACGCTGTAAACAAAGTTAACCAGTACAGCACGGCAGGGAATTATGATATTAAATACGACATGAATGGAAATATGGAGGAGAAGACGAACAGGAATGTGCGGAACGACAGTGTCAAATTCAAATTTAGTTCCGAGGATTTCCTGCTGCAAGCTGAAACTCCAAACAAAAGATGTAACTATGTCTATGATGGCTTGGGAAACTTGTACAAGAAGTCATGCGGTCAAACAGAAGTGCAATACGTCATCGATCCGTTCGGTAATCCAGGAGCTGATATTATTGGCCAGATTTCTGGTGGAAATATAACACAGTTTGTCCACTGTGAAGAGCTTGGATTGGTTGCTTTGATTGACATGAATGGTGACGTGTATTATTACGAGTTTGACGGTCTGGGGTCTGTCGTAGGAGTACTGGGTCCAAGTGGCGATCGTACCAATCGCTACAGCTATGATCCGTTTGGCAGTATGTTAGAAGTCGATGAAGGGTTGCCGCAGGACTTCACGTTTATTGGTCAATGGGGTGTGATTGTGAACCGCGAACTTAGGGATAGCTACTGGATGCGATCCAGACACTACGATGCGCAGCTTGGAAGATTTCTTAGCCTTGATCCACTTGGTTTTAAAGGGAAAAGTATCAATCTTTACTCGTACGCAGCCAACAATCCCGTGATGCTGAAGGACCCTCGAGGGCGATTTATTGCTACAGTCGGCGCAGGCTTTGTAAGCGCAGGGGTGGATGTTGCTGCTTATATGGCAGCTCAGAAATTGAAAAATGAAGAAATTACCATGGGAGGAGTTGTGTCAACTGCAGTAACCGGTTTTGTCTCGTCTTTTTTCAAAAAAGGAAAAATCGTTGTCGCGGCTATTTCTGGTGTCGGAAGCTCTATCATAAGGCAACGGATTGATGATGGTAGCGTTAATGTGGGGAAGGCATTGGAAGATGGAATCAATAGCGCAATTGCCGCAGCCATTCCTGGATTCAACGGTTTCGTCGGAAAGACTCTTAAAAACAGATATGCGCCGACAGCAAAGGATATAACAAAATGGGGAAAGATTGTCCTCAAAATCTCCATCACCTGGGTCCGGTCCTGGGATCCGAACGACATGATTGGTCCTCCAGGATACGGAAACGCGCGTTTTATTTCATTGAAGACGCCGCTGACCTACAAGATCAGGTTTGAGAATGATGCTAATGCAACAGCTCCTGCCCAACACGTGATCGTTCTGCACACGTTGGACCAAGACTTGGACATTCGCACATTTAGAATTACAGGTTTTGGATTTGGCAGCTTTACTAAAACGTTCACGAGTTCAGTAGCCTCTGTTCAGGAAACAATCAACCTTGTGTCAGAGAAGAATATCTATGTACGAGTGCTTGCCGGTATAGATGTTATGACTCGTGAAGCACGCTGGGAATTTCAGAGCCTCGACCCTGAGACAGGCGAGGCTCCTGATGATCCACGAACAGGCTTCCTTCCACCAAACAATGGCACGACAGGTCAAGGATATGTGACTTTCTCTGTTCGCCTTAAGAAGAACGTGCCATCTTTAGCAAGGATTGACGCGAAAGCCAGTATCTACTTTGACAAGAACGAACCGATCGATACTCCTCCAATCTTTAACACGATTGACAGTTTGAGCCCCTCCTCCAATATATCTGTTATAAGTGACGTCATGAAGGCTGGTAAGCTGGTCGTGGATATCGATACACAAGACGAGGGGTCTGGGGTCCAGTCGGTTGACATGTTCTATCAAATCTCAGAGGGGAATGAGCCGCTCCAAGACCAATCTCTACTCCCTCTACTGTCCGGTATAACAGACGATACAGCTTTCCTGCCCCTCCCCCCTGGGAAGACGTATACACTTTTGGCTTTGGCTGTTGATCACGTGGGTAACAGGCAGCCAATGGACTGGAATCGAGCAATCACAGTGGACTTTACTCTTCCGAAACCTTCCTGTGAACGACTGAACAACTGCTCCGGCCATGGAAATTGCTCTGTTCTCAATCTCTGTGTCTGTGAAGACGGATTTTATGAAGTTAACTGCTCACTCGATTTTCCTTTACGCTTTGAGACTCCGGTCATCAACTCTATGTACAGCGACACCAATGAAGACATGCGCACTCAGTTGTACCTCTCTGCTTTTATCCCCGATATTGAAAACAGCGGCTACAATGAAAATTTCAAACTGAAACTCTACATCGATGAAGTTCCTCAAGAATTCACTTTTAACAAAGGAAACAAGAGTGCGAATCGCGTCATTTTAGAGCGTGAAGATTTCGGAGATATTTGGATGACGCCCCAAAAAGACTTTTCAGGCCTTGTCAAACTGAACATCACCGCGGAAGCCACCACGCCAAGGGAAACAAAAATCGCCAGCAGCCAAATTGAAATAAAGATCAAAGCCGTTGCTGACATGCCGTTTCTTAATGTTAGAGTTCCTTGTTATCATTGGAACAGCAGTGAAAAGATCATACCAGTATCTCTAGAAAGCCACTTGAATGACCGTGATGGTTCCGAGAATCTGACGATTATCTTCTCGGGTTTACCGAGTGATTATCGATCAGTTTACGAGAATGTCACGAAATTTGTAAACGGCAGTAATGATACAGCTCCGCATAACTCGCCTGGTTGGTTTATTTCGTTTAACGGGACGTTAAAACCATTCGTTCTGAGTGTAGTTGCAATAGCAATGGAAAGATCCAACGGAGACAAAGCAAACAGGACGGTCGCTGTTGATGTGGCATTTTGTGGTAAGTTTCATGACATTGGCGTTTTAATTGCTGAAAATGTTTTAGGATGTCCTTATCCACAGTGA

Transcript

OS493_010262-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001664 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05593 all species →	RHS_repeat	RHS Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR022385 all species →	Domain	Rhs repeat-associated core	Interproscan
IPR006530 all species →	Repeat	YD repeat	Interproscan
IPR031325 all species →	Repeat	RHS repeat	Interproscan
IPR051216 all species →	Family	Teneurin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11219 all species →	TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0042803 all species →	Molecular Function	protein homodimerization activity	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0048666 all species →	Biological Process	neuron development	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010262-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_010262-T1 global co-expression network