Gene detail

Detailed information of OS493_010265-T1 in Lophelia pertusa

Genomic Location: scaffold_25:501981...504808
NR annotation: KAJ7392614.1, hypothetical protein OS493_010265 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0023770 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07974 all species →	EGF_2	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050969 all species →	Family	Developmental Signaling Modulators	Interproscan
IPR013111 all species →	Domain	EGF-like domain, extracellular	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14949 all species →	EGF-LIKE-DOMAIN, MULTIPLE 7, 8	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_010265-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010265-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010265-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

50.3Max TPM

12.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.43	33.69
polyp at pH7 6	18	18	18.43	50.27
coral polyp · control treatment	16	16	10.68	33.56
coral polyp · oil and dispersant treatment	16	15	6.76	17.94
coral polyp · oil treatment	16	15	10.85	24.00
coral polyp · dispersant treatment	16	16	6.16	17.22
Polyp	10	9	11.25	34.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.33
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.77
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.27
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	34.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	33.34
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.