Gene detail

Detailed information of OS493_010279-T1 in Lophelia pertusa

Genomic Location: scaffold_25:664188...669607
NR annotation: KAJ7392628.1, von Willebrand factor A domain-containing protein 8 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0R0T1	von Willebrand factor A domain-containing protein 8 OS=Danio rerio OX=7955 GN=vwa8 PE=3 SV=1
A3KMH1	von Willebrand factor A domain-containing protein 8 OS=Homo sapiens OX=9606 GN=VWA8 PE=1 SV=2
Q8CC88	von Willebrand factor A domain-containing protein 8 OS=Mus musculus OX=10090 GN=Vwa8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005849 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_010279-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR039891 all species →	Family	von Willebrand factor A domain-containing protein 8	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21610 all species →	VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010279-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010279-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

120.0Max TPM

18.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.43	23.23
polyp at pH7 6	18	18	18.15	29.82
coral polyp · control treatment	16	16	20.93	77.37
coral polyp · oil and dispersant treatment	16	16	16.69	72.13
coral polyp · oil treatment	16	16	24.30	119.97
coral polyp · dispersant treatment	16	16	12.12	47.91
Polyp	10	10	16.12	28.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.71
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.18
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.53

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.