Gene detail

Detailed information of OS493_010285-T1 in Lophelia pertusa

Genomic Location: scaffold_25:729186...747351
NR annotation: KAJ7392634.1, hypothetical protein OS493_010285 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q568K2	E3 ubiquitin-protein ligase PPP1R11 OS=Danio rerio OX=7955 GN=ppp1r11 PE=1 SV=1
Q8K1L5	E3 ubiquitin-protein ligase PPP1R11 OS=Mus musculus OX=10090 GN=Ppp1r11 PE=1 SV=1
Q6GLB0	E3 ubiquitin-protein ligase PPP1R11 OS=Xenopus tropicalis OX=8364 GN=ppp1r11 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008544 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07491 all species →	PPI_Ypi1	Protein phosphatase inhibitor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011107 all species →	Family	Type 1 protein phosphatase inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20835 all species →	E3 UBIQUITIN-PROTEIN LIGASE PPP1R11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004865 all species →	Molecular Function	protein serine/threonine phosphatase inhibitor activity	Interproscan
GO:0032515 all species →	Biological Process	obsolete negative regulation of phosphoprotein phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008157 all species →	Molecular Function	protein phosphatase 1 binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17553	PPP1R11; protein phosphatase 1 regulatory subunit 11	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010285-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

131.5Max TPM

27.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	28.67	42.42
polyp at pH7 6	18	18	28.07	58.01
coral polyp · control treatment	16	16	35.67	131.45
coral polyp · oil and dispersant treatment	16	16	27.83	90.31
coral polyp · oil treatment	16	16	31.66	45.51
coral polyp · dispersant treatment	16	16	14.56	24.87
Polyp	10	10	26.40	40.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.42
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.52
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.01
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.75
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.15
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.33
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	131.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.47
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.92
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.30
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	40.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	27.60
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	20.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.