Gene detail

Detailed information of OS493_010286-T1 in Lophelia pertusa

Genomic Location: scaffold_25:747737...750620
NR annotation: KAJ7392635.1, DnaJ sub C member 12 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R022	DnaJ homolog subfamily C member 12 OS=Mus musculus OX=10090 GN=Dnajc12 PE=1 SV=1
Q9UKB3	DnaJ homolog subfamily C member 12 OS=Homo sapiens OX=9606 GN=DNAJC12 PE=1 SV=1
Q925T0	DnaJ homolog subfamily C member 12 OS=Rattus norvegicus OX=10116 GN=Dnajc12 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007871 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR029827 all species →	Family	J domain-containing protein 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44500 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09532	DNAJC12; DnaJ homolog subfamily C member 12	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010286-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

59.5Max TPM

23.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	21.31	38.83
polyp at pH7 6	18	14	17.52	43.00
coral polyp · control treatment	16	16	31.25	52.84
coral polyp · oil and dispersant treatment	16	16	26.42	59.45
coral polyp · oil treatment	16	16	31.64	49.04
coral polyp · dispersant treatment	16	16	17.45	30.82
Polyp	10	9	21.24	47.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.06
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.70
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.24
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.21
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.53
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.30
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	47.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.68
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.