Detailed information of OS493_010297-T1 in Lophelia pertusa

Genomic Location: scaffold_25:806008...813325
NR annotation: KAJ7392646.1, Lysosome-associated membrane glycoprotein 1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P11438Lysosome-associated membrane glycoprotein 1 OS=Mus musculus OX=10090 GN=Lamp1 PE=1 SV=2
P05300Lysosome-associated membrane glycoprotein 1 OS=Gallus gallus OX=9031 GN=LAMP1 PE=2 SV=1
P49129Lysosome-associated membrane glycoprotein 1 OS=Cricetulus griseus OX=10029 GN=LAMP1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002080 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01299
all species →		LampLysosome-associated membrane glycoprotein (Lamp)FamilyInterproscan
PF21222
all species →		Lamp2_2ndLysosome-associated membrane glycoprotein 2, transmembrane segmentDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002000
all species →		FamilyLysosome-associated membrane glycoproteinInterproscan
IPR048528
all species →		DomainLysosome-associated membrane glycoprotein 2-like, luminal domainsInterproscan
IPR048524
all species →		DomainLysosome-associated membrane glycoprotein 2-like, transmembrane domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11506
all species →		LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005765
all species →		Cellular Componentlysosomal membraneInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0031902
all species →		Cellular Componentlate endosome membraneInterproscan
GO:0072594
all species →		Biological Processestablishment of protein localization to organelleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_010297-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_010297-T1 global co-expression network
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