Gene detail

Detailed information of OS493_010315-T1 in Lophelia pertusa

Genomic Location: scaffold_25:969717...972577
NR annotation: KAJ7392664.1, Disks large 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31007	Disks large 1 tumor suppressor protein OS=Drosophila melanogaster OX=7227 GN=dlg1 PE=1 SV=2
Q12959	Disks large homolog 1 OS=Homo sapiens OX=9606 GN=DLG1 PE=1 SV=2
Q811D0	Disks large homolog 1 OS=Mus musculus OX=10090 GN=Dlg1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002696 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09058 all species →	L27_1	L27_1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015143 all species →	Domain	L27-1	Interproscan
IPR036892 all species →	Homologous_superfamily	L27 domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for OS493_010315-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010315-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010315-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

59.3Max TPM

24.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.65	27.69
polyp at pH7 6	18	16	15.79	27.85
coral polyp · control treatment	16	16	32.16	49.11
coral polyp · oil and dispersant treatment	16	16	28.80	46.98
coral polyp · oil treatment	16	16	29.11	58.11
coral polyp · dispersant treatment	16	16	33.11	59.33
Polyp	10	9	8.91	21.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.80
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.54
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.63
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.37
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.29
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.26
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.