Gene detail

Detailed information of OS493_010325-T1 in Lophelia pertusa

Genomic Location: scaffold_25:1058684...1061045
NR annotation: KAJ7392674.1, hypothetical protein OS493_010325 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q50JE5	Angiotensin-converting enzyme OS=Mesocricetus auratus OX=10036 GN=Ace PE=2 SV=1
P09470	Angiotensin-converting enzyme OS=Mus musculus OX=10090 GN=Ace PE=1 SV=3
P12822	Angiotensin-converting enzyme OS=Oryctolagus cuniculus OX=9986 GN=ACE PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000977 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01401 all species →	Peptidase_M2	Angiotensin-converting enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001548 all species →	Family	Peptidase M2, peptidyl-dipeptidase A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10514 all species →	ANGIOTENSIN-CONVERTING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008241 all species →	Molecular Function	peptidyl-dipeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010325-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010325-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

29.8Max TPM

7.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.11	21.41
polyp at pH7 6	18	17	8.49	27.94
coral polyp · control treatment	16	16	10.76	29.76
coral polyp · oil and dispersant treatment	16	15	7.17	23.02
coral polyp · oil treatment	16	16	9.97	17.59
coral polyp · dispersant treatment	16	16	6.69	18.77
Polyp	10	9	1.82	8.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.51
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.81
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.50
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.77
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.