Gene detail

Detailed information of OS493_010327-T1 in Lophelia pertusa

Genomic Location: scaffold_25:1073514...1082536
NR annotation: KAJ7392676.1, hypothetical protein OS493_010327 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_010327-T1

ATGAACTGCATAACTCGGAGAGGTCGTGGTATTCTGGTGGCGTTCGAAGGTTGTGATCGAAGCGGGAAATCAACACAATGTCAAATGCTTGTAGAATATTTGAAATCGATTGGACGAGATGTAGCTCTTTTACGATTTCCAGACAGAACAACAGCCATTGGACAGTCCATCAATTCATATCTACAGGGCACAACTGAGTTAGAAGATCATGTGATTCATTTACTGTTTTCTGCAAACAGATGGGAGGCTGTACCCAAAATAAAGCAGCTTTTAGACAATGGAACTCTTGTGATAGGTTTTGATGTGACATGGTGTAAGAATCCTGATCGGGGTTTGCCAAATCCTGATGTGGTTTTTTATTTAGACATCTCAACCAAAGATGCCGTGACAAGGGGCTCCTACGGCGAGGAAAGGTACGAGATGGTTGAATTCCAAGAACGAGTCGCAGAGATCTATAAACAACTCAAGAGTGATGACTGGAAGGTTGTAGATGCTATGAAAAATATCAATGAAATTCACACGGAGATCCGAGACACTGTTCTCGAATTGGAAGCGCTGTCAATCGATACAATCGCCAGCCAATGGCAGATAAACATCAATTTACCCCCAATGGGCTTCTTGTGTGTTGCAAGCAGTTTTCATTGCAAGGTCGGAAGAAGTCAACAGTGTCTTAGCAGTGAGCAGATTTGCAACTCTTGTTTCTTCACGCGTTTTGATCACGCGGAACCAAAAATGGAGGCTGGTCCTCTAACGCGAAATTACCCGAACATTTTCGAGTGTTTGACGAGCCACAATCCATCCATGCCGGCTTTTGGCCTACAGAGACCCGTGATGCCCGATAACGTTGAGTTGACTCCAGATGCTACCCACGGATATTCACCATACGCCGAGTCTCCCATGCATTTGCCCGGTTTGAGGACGGGCGCTCACGATTTTATCCACACACTATCAGGGGGTAGTGCTCAAGGGGCGTTTAACCTGCAGGCCAATTATCCAGTCCCAGCTGCGTATTCTTCACTGGCTGCCCGTGGAAGAGAGTTCCTGCTACGCCGTGAACATGTAACGCTGCCTTCTGTATCGTTACCGACTCACACCATCTCCGTGGACGTGACAGCTTCGTCGGCGAATCTTGTTGTTCCACCACCGCCCCCTTCTGCGTTTCAACAAACGATCTTCACGACGAGCAACGTAGCTCTCCATGCCATCAACATTCCAAGTTTCGCCAACGGTCCTGCTCCGCTGCCGTCCCAAGCGCTCGGACAAGACGCGCATCACGCCGCCTCCTACTCTAACGTTGGTCTTTCGAACCACGTTCAAGCGTCACCGACATCAGAAGCCAGCAACAGCAGTAGCGATTCACAAACGGAGTCCTCTCGCGTATCGGTGAATATTGGCGATGCCCAAGGAAGCATTGTGTTGCCTCATCCAAGCCCGCTCAATGCAGTGAAAGCCGGCTTCGTGCCCTCGCCCACAAGCGTTGTGCCGTCCATGGAATTGTCATCCAATGGTGCGTTTCTCCGCTACATAAGACCACAAGGCAAGCTAGAATTCGTGTGCAGATGGGCGCTTCTACGCAACAAAATATCCATCCCTTGCGATAAAAATTACCCAACCATTCAGGAGTTGGTGAAGCATCTTTCTTTGGAGCATGTGGGAGGAAGCGATGGCAATTCTTCACACGTCTGTTTGTGGCATGAGTGTCACAGAGGAGGCAAACCATTCAAAGCCAAGTACAAGCTTATCAACCACATTCGTGTTCACACTGGAGAGAAGCCCTTCTCGTGCCCCTTTGCCAACTGCGGGAAAACCTTCGCGCGCTCGGAAAATCTCAAGATTCACAAGCGCACGCACACGGGAGAAAAGCCATTCGTGTGTGAATTTCCTGGCTGTAATCGTCGTTTCGCCAACTCGAGCGATCGTAAGAAGCACTCCCATGTCCACACCGCGGATAAACCGTACCTCTGTAGAGTGCCAAGCTGTGGCAAGAGCTACACACATCCAAGCTCTCTAAGGAAGCATTTAAAGATGCATTTGAAGGCCGCAAACGGAAGTCTGGCTTTGGACAGTAACGAGAGCATGGCGTTGATGTCGCAGGCGGAATTACAACTGAACAGTTCTAATGTTCAGTCTAGAAATATGCAGCCGTGGTTTGCTTTCGCTCAACAACCACCGAAAAGTGGCATTTCATTGAATGCGCAAGCAGTGAAAGAAGAAACAGCGAACTAA

Transcript

OS493_010327-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3B752	Thymidylate kinase OS=Danio rerio OX=7955 GN=dtymk PE=2 SV=1
Q0WW55	Thymidylate kinase OS=Arabidopsis thaliana OX=3702 GN=ZEU1 PE=2 SV=1
Q54GN2	Thymidylate kinase OS=Dictyostelium discoideum OX=44689 GN=dtymk PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006871 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02223 all species →	Thymidylate_kin	Thymidylate kinase	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF18366 all species →	zf_ZIC	Zic proteins zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR039430 all species →	Domain	Thymidylate kinase-like domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018094 all species →	Family	Thymidylate kinase	Interproscan
IPR041643 all species →	Domain	ZIC protein, zinc finger domain	Interproscan
IPR050329 all species →	Family	GLI C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818 all species →	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004798 all species →	Molecular Function	thymidylate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006233 all species →	Biological Process	dTDP biosynthetic process	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010327-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_010327-T1 global co-expression network