Gene detail

Detailed information of OS493_010363-T1 in Lophelia pertusa

Genomic Location: scaffold_25:1418948...1420498
NR annotation: KAJ7392710.1, hypothetical protein OS493_010363 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14857 all species →	TMEM151	TMEM151 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026767 all species →	Family	Transmembrane protein 151	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31893 all species →	TRANSMEMBRANE PROTEIN 151 HOMOLOG	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_010363-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010363-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010363-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

164.5Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.88	4.19
polyp at pH7 6	18	18	2.03	4.75
coral polyp · control treatment	16	16	3.27	25.41
coral polyp · oil and dispersant treatment	16	16	12.21	164.50
coral polyp · oil treatment	16	16	2.05	10.22
coral polyp · dispersant treatment	16	16	10.19	28.48
Polyp	10	9	0.89	2.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	164.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.