Gene detail

Detailed information of OS493_010389-T1 in Lophelia pertusa

Genomic Location: scaffold_25:1586112...1588329
NR annotation: KAJ7392736.1, FAD1 flavin adenine dinucleotide synthetase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68EH8	FAD synthase OS=Danio rerio OX=7955 GN=flad1 PE=2 SV=1
Q8NFF5	FAD synthase OS=Homo sapiens OX=9606 GN=FLAD1 PE=1 SV=1
Q8R123	FAD synthase OS=Mus musculus OX=10090 GN=Flad1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01507 all species →	PAPS_reduct	Phosphoadenosine phosphosulfate reductase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002500 all species →	Domain	Phosphoadenosine phosphosulphate reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23293 all species →	FAD SYNTHETASE-RELATED FMN ADENYLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003919 all species →	Molecular Function	FMN adenylyltransferase activity	Interproscan
GO:0006747 all species →	Biological Process	FAD biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_010389-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010389-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

18.1Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.55	4.40
polyp at pH7 6	18	14	1.88	3.63
coral polyp · control treatment	16	16	4.04	18.14
coral polyp · oil and dispersant treatment	16	16	3.46	14.38
coral polyp · oil treatment	16	16	3.02	4.59
coral polyp · dispersant treatment	16	15	1.47	3.05
Polyp	10	8	1.88	3.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.37
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.