Gene detail

Detailed information of OS493_010448-T1 in Lophelia pertusa

Genomic Location: scaffold_25:2138919...2143086
NR annotation: KAJ7392789.1, hypothetical protein OS493_010448 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16760	Diacylglycerol kinase delta OS=Homo sapiens OX=9606 GN=DGKD PE=1 SV=4
E9PUQ8	Diacylglycerol kinase delta OS=Mus musculus OX=10090 GN=Dgkd PE=1 SV=1
Q86XP1	Diacylglycerol kinase eta OS=Homo sapiens OX=9606 GN=DGKH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002446 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46829 all species →	STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14565	NOP58; nucleolar protein 58	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_010448-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

138.8Max TPM

35.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.60	20.87
polyp at pH7 6	18	18	12.98	25.53
coral polyp · control treatment	16	16	36.36	92.94
coral polyp · oil and dispersant treatment	16	16	70.96	118.70
coral polyp · oil treatment	16	16	29.38	60.21
coral polyp · dispersant treatment	16	16	74.45	138.80
Polyp	10	9	6.16	10.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.62
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	123.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	123.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.23
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.28
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.